Resource Type:
Analysis
Name:
Carrot Genome Assembly DCARv2 Gaps
Description:
This analysis represents the JBrowse annotation of gaps in the assembled carrot genome sequence.
This JBrowse track shows all gaps in the genome assembly consisting of runs of 1 or more 'N's. Gaps of exactly 1000nt are a special case, and represent gaps of undetermined size.
Data from this analysis can be viewed in JBrowse here.
File:
| File | Type |
|---|---|
| DCARv2 Gaps JBrowse GFF3 | GFF3 |
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The analysis, Carrot Genome Assembly DCARv2 Gaps, is a part of analysis, Carrot Genome Assembly DCARv2. |
Program, Pipeline, Workflow or Method Name:
detection using regular expression
Program Version:
not specified
Date Performed:
Friday, November 13, 2015 - 00:00
Data Source:
- Source Name
- : CarrotOmics 177698
Organism:
| Name | Common Name | Comment |
|---|---|---|
Carrot | For a general overview of carrot, see the Carrot Facts Page |