10.3390/ijms22189713 Plastid phylogenetic tree

Resource Type:

Analysis

Name:

Phylogenetic tree:


10.3390/ijms22189713 Figure 4 Plastid

Description:

Phylogenetic relationships were inferred from 53 species of the Apiaceae family by using Panax notoginseng (Arialaceae) as an outgroup. The 54 plastid genomes were retrieved from GenBank and aligned using MAFFT v7.450 under default parameters; Geneious prime (Biomatters, Inc., San Diego, CA, USA) was used to reconstruct the phylogenetic relationships based on the Neighbor-Joining (NJ) method, and 1000 bootstrap replicates.

File:


File	Type
10.3390/ijms22189713 cpDNA-Apiaceae.newick	newick

Publication:

Palumbo F, Vannozzi A, Barcaccia G. Impact of Genomic and Transcriptomic Resources on Apiaceae Crop Breeding Strategies.. International journal of molecular sciences. 2021 Sep 08; 22(18).

Program, Pipeline, Workflow or Method Name:

MAFFT + Geneious Prime NJ

Program Version:

7.450

Date Performed:

Thursday, July 29, 2021 - 00:00

Data Source:

Source Name: : 10.3390/ijms22189713 plastid alignment

Project:


Name	Description
10.3390/ijms22189713 Phylogenetic Trees Study	This project provides two analyses for the two phylogenetic trees presented in figure 4 of the publication.