DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0

Resource Type:

Analysis

Name:

Description:

Gene predictions from the Carrot Genome Assembly DCARv2 were transferred to the Carrot Genome Assembly DCARv3 using GMAP. Organellar annotations were transferred separately using CrossMap with manual corrections for trans-spliced genes.

File:


File	Type
DCARv2 Gene annotation V1.0 locations on DCARv3 assembly	GFF3

Publication:

Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.

Relationship:

There are 2 relationships.
Relationships
The analysis, DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0, derives from analysis, DCAR V1.0 Gene Prediction.
The analysis, DCAR Gene annotation V1.0 locations on Carrot Genome Assembly DH1 V3.0, is a part of analysis, Carrot Genome Assembly DH1 v3.0.

Program, Pipeline, Workflow or Method Name:

GMAP and CrossMap

Program Version:

2020-04-05-v2-cds_vs_DCARv3.4.HMD

Date Performed:

Saturday, April 25, 2020 - 00:00

Data Source:

Source Name: : Carrot Genome Assembly DH1 v3.0

Organism:


Name	Common Name	Comment
Daucus carota subsp. sativus	Carrot	For a general overview of carrot, see the Carrot Facts Page

Biomaterial:


Name	Description
SAMN03216637	This biosample is also known by its germplasm accession of DH1, please see this record for more details.

Project:


Name	Description
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot	The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.