Carrot Genome Assembly DH1 v3.0 Tandem Repeats annotation by trf

Resource Type: 
Analysis
Name: 
Carrot Genome Assembly DH1 v3.0 Tandem Repeats annotation by trf
Description: 

Tandem repeat detection with Tandem Repeats Finder version 4.07b

File: 
FileType
DCARv3 Tandem Repeats AnnotationGFF3
Publication: 
  1. Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.
  2. Benson G. Tandem repeats finder: a program to analyze DNA sequences.. Nucleic acids research. 1999 Jan 15; 27(2):573-80.
Relationship: 
There is 1 relationship.
Relationships
The analysis, Carrot Genome Assembly DH1 v3.0 Tandem Repeats annotation by trf, is a part of analysis, Carrot Genome Assembly DH1 v3.0.
Program, Pipeline, Workflow or Method Name: 
Tanden Repeats Finder
Program Version: 
4.07b
Date Performed: 
Wednesday, October 9, 2019 - 18:53
Data Source: 
Source Name
: Carrot Genome Assembly DH1 v3.0
Organism: 
NameCommon NameComment
Daucus carota subsp. sativus
Carrot
For a general overview of carrot, see the Carrot Facts Page
Biomaterial: 
NameDescription
SAMN03216637

This biosample is also known by its germplasm accession of DH1, please see this record for more details.
Project: 
NameDescription
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot

The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.