Resource Type:
Genome Annotation
Name:
NCBI Daucus carota subsp. sativus Annotation Release 100
Description:
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.
View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/
Data from this analysis can be viewed in JBrowse here.
File:
| File | Type |
|---|---|
| NCBI FTP Download for GCA_001625215.1_ASM162521v1 | NCBI Data Download FTP Link |
| DCARv2 NCBI Annotation Release 100 Gene Prediction JBrowse GFF3 | GFF3 |
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The analysis, NCBI Daucus carota subsp. sativus Annotation Release 100, is a part of analysis, Carrot Genome Assembly DCARv2. |
Organism:
| Name | Common Name | Comment |
|---|---|---|
Carrot | For a general overview of carrot, see the Carrot Facts Page |
Feature:
There are 44480 CDS features
There are 339687 exon features
There are 35984 gene features
There are 44480 mRNA features
There are 4973 ncRNA features
There are 44480 polypeptide features
There are 2170 transcript features
There are 441 tRNA features
Total: 516695
There are 339687 exon features
There are 35984 gene features
There are 44480 mRNA features
There are 4973 ncRNA features
There are 44480 polypeptide features
There are 2170 transcript features
There are 441 tRNA features
Total: 516695
Program, Pipeline, Workflow or Method Name:
NCBI Eukaryotic Genome Annotation Pipeline
Program Version:
7.1
Date Performed:
Monday, June 27, 2016 - 00:00
Data Source:
- Source Name
- : GCF_001625215.1
- Source URI
- : https://www.ncbi.nlm.nih.gov/assembly/GCF_001625215.1/