2016 70349 NG bin map

Resource Type: 
Genetic Map
Name: 
2016 70349 NG bin map
Description: 

Genetic maps of three populations were used to establish a consensus map suitable for guiding the construction of superscaffolds and pseudomolecules. Each linkage map consisted of a “full” dataset including all the segregating markers mapped in each population and a “bin” data set, consisting of markers representing unique recombination events.

This is the "bin" data set map, the "full" data set map can be found here.

The F2 population 70349, consisting of 187 individuals, resulted from an original cross between P4201 [58262⊗] (an inbred line with purple outer phloem and yellow xylem storage roots and purple petioles) and B6320 [96'606-4] (an inbred with orange roots and green petioles derived from the European open-pollinated cultivars Nantes and Camberley). The 70349 genetic map included 894 co-dominant markers (482 bins) with known sequence information.

Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Map Type: 
genetic
Organism: 
NameCommon NameComment
Carrot
For a general overview of carrot, see the Carrot Facts Page
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Stock: 
NameUniquenameStock Type
70349
population
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Population Type: 
F₂
Population Size: 
187
Units: 
cM
Number Of Linkage Groups: 
9
Number Of Mendelian Trait Loci: 
2
Number Of Markers: 
478
Type And Number Of Markers: 
  • SNP: 447
  • SSR: 23
  • STS-Sanger: 3
  • STS: 2
  • CAPS: 2
  • FISH: 1
File: 
FileType
16.marker.66-74microsoft excel xlsx file
Software: 
JoinMap 4.0
MapViewer Overview: 

Click on any linkage group to explore this map further. You will be taken to MapViewer and leave this page.