MK001297 BSSR-140 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK001297 BSSR-140

Identifier:

MK001297_BSSR_140

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.

Cross Reference:


NCBI Nuccore	FJ149308

Relationship:

There are 3 relationships.
Relationships
The genetic_marker, MK001297 BSSR-140, is adjacent to primer, BSSR-140F.
The genetic_marker, MK001297 BSSR-140, is adjacent to primer, BSSR-140R.
The marker_locus, BSSR-140, is an instance of genetic_marker, MK001297 BSSR-140.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2013 10117 A	LG08	23.9	BSSR-140	MapViewer
2013 10117 B	LG08	34.3	BSSR-140	MapViewer

Synonyms:

MK001297

Sequence Coordinates:

DCARv2_Chr8:29334507..29334702-

View location in JBrowse:

DCARv2_Chr8:29334507..29334702-

Sequence:

TTCATTGCAAGGATCTTTGTACATAGTCCAAGAGGATGCTCGTGTGAAAA
TATATCAAGTCTTGTAACTTAGCAGGGAAACTTAGTTAAAAGAAGTATTA
TCGGTTACAAGGCAAACTTGCTAGCATGAGCTACCTTCTGGAACTATAAC
TTTCCGTACGTTACGGTTACTGACAAACGTATATTACAACGTACATATCT
CATAATTGAAATATGATTTAGTAGTCGTTTTGATACGTGAACAAGAGAGC
GGATTTGATTTTGTCAAGAAATTATGTAAGTTTGATATATTCGGAAGTCA
ATATATATTATGATATTGTTCAAATGAAAATTGAACGTGAAAAAATTGTA
AAATATTTAATATCCTGATACACAATTTAAACATAATTATTGGTGCCAAA
GTACTTGAAGTGTTAATGAGTTGATTAACTCAGCTTCATGATCCTAGAAT
TTGTCTTAATGTGGGTTTACAGATTGAGTAGTTGACCCCTAATTAGTTAA
TCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTCAAGATTTCAGTCGAGGATGAACTCCAACATTCACTAAATTTG
TAAGTCCGAGCTCGATTTCGTAAAATTAGTCTAATCCTGGTCTCTGTGTT
AACGAACTTGAGTTCGAATAACAAAAAATATTTGATATTGATCCGTTTAG
CAAAAAGTTGAACTCAAAATTGATCAGAAAATCTCGACTTGAATCGGTTC
ATTTATGGCCTCCGATTTACACATGCATGAGCAAAAGCACACATGTACGT
TTCCACGATAAACAAGATGGATTTTCCCACCTCTATAATTATTAAAAAAA
TGCTCCCACACAAAAATAAATAAATTAAGGGTGCCTCGTCAAAATTCACA
TGCCGCATGCCCGAAAGAAATAATCATAAATCCGCCCCGTCTGAACCCTG
GTTAAAGTCCGTGGAAGAGGCTAAGCAACATGGCCGGAGATATACTTCTT
CCTGCACAGAAGTTCCTTATATT

Sequences:

Primary genetic marker Sequence (1,073bp)

>MK001297_BSSR_140 ID=MK001297_BSSR_140; Name=MK001297 BSSR-140; organism=Daucus carota; type=genetic_marker
TTCATTGCAAGGATCTTTGTACATAGTCCAAGAGGATGCTCGTGTGAAAA
TATATCAAGTCTTGTAACTTAGCAGGGAAACTTAGTTAAAAGAAGTATTA
TCGGTTACAAGGCAAACTTGCTAGCATGAGCTACCTTCTGGAACTATAAC
TTTCCGTACGTTACGGTTACTGACAAACGTATATTACAACGTACATATCT
CATAATTGAAATATGATTTAGTAGTCGTTTTGATACGTGAACAAGAGAGC
GGATTTGATTTTGTCAAGAAATTATGTAAGTTTGATATATTCGGAAGTCA
ATATATATTATGATATTGTTCAAATGAAAATTGAACGTGAAAAAATTGTA
AAATATTTAATATCCTGATACACAATTTAAACATAATTATTGGTGCCAAA
GTACTTGAAGTGTTAATGAGTTGATTAACTCAGCTTCATGATCCTAGAAT
TTGTCTTAATGTGGGTTTACAGATTGAGTAGTTGACCCCTAATTAGTTAA
TCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTCAAGATTTCAGTCGAGGATGAACTCCAACATTCACTAAATTTG
TAAGTCCGAGCTCGATTTCGTAAAATTAGTCTAATCCTGGTCTCTGTGTT
AACGAACTTGAGTTCGAATAACAAAAAATATTTGATATTGATCCGTTTAG
CAAAAAGTTGAACTCAAAATTGATCAGAAAATCTCGACTTGAATCGGTTC
ATTTATGGCCTCCGATTTACACATGCATGAGCAAAAGCACACATGTACGT
TTCCACGATAAACAAGATGGATTTTCCCACCTCTATAATTATTAAAAAAA
TGCTCCCACACAAAAATAAATAAATTAAGGGTGCCTCGTCAAAATTCACA
TGCCGCATGCCCGAAAGAAATAATCATAAATCCGCCCCGTCTGAACCCTG
GTTAAAGTCCGTGGAAGAGGCTAAGCAACATGGCCGGAGATATACTTCTT
CCTGCACAGAAGTTCCTTATATT

This is the primary representative sequence for this feature.

Sequence Length:

1073