MK002135 ESSR-030 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK002135 ESSR-030

Identifier:

MK002135_ESSR_030

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.

Relationship:

There are 4 relationships.
Relationships
The genetic_marker, MK002135 ESSR-030, is adjacent to primer, ESSR-030-F.
The genetic_marker, MK002135 ESSR-030, is adjacent to primer, ESSR-030-R.
The genetic_marker, MK002135 ESSR-030, is adjacent to gene, LOC108199420.
The marker_locus, ESSR-030, is an instance of genetic_marker, MK002135 ESSR-030.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 70796 NG bin map	Chr8	13.77	ESSR-030	MapViewer
2016 70796 NG full map	Chr8	13.77	ESSR-030	MapViewer
2013 10117 A	LG08	39	ESSR-030	MapViewer
2013 10117 B	LG08	48.6	ESSR-030	MapViewer
2016 Integ NG bin map	CH8	46.933	ESSR-030	MapViewer
2016 Integ NG full map	CH8	52.617	ESSR-030	MapViewer

Synonyms:

MK002135

Sequence Coordinates:

DCARv2_Chr8:25106932..25107207+

View location in JBrowse:

DCARv2_Chr8:25106932..25107207+

Sequence:

TCCCGGCTAAATGAACTGTCCAGTCAAAAAAGTTCTCCTAAGCTCAAAGT
GTGAACCCACAACATGAACCTGCTGTCATGAGTAAGAACAAAGAGTTCTA
TTTGGTAAAGTAGCATTTTGAAGTACTTTTTTCACATTCACCTAATATTA
GAAGTTTAATCAACATTAGAAATACATCTGCTCTTGACAGCAGGCAAGAG
GCAGGGAACAGGAACAGGAACAGGTCAGAACAAGGATTAACACACACATC
ATCGC

Sequences:

Primary genetic marker Sequence (255bp)

>MK002135_ESSR_030 ID=MK002135_ESSR_030; Name=MK002135 ESSR-030; organism=Daucus carota; type=genetic_marker
TCCCGGCTAAATGAACTGTCCAGTCAAAAAAGTTCTCCTAAGCTCAAAGT
GTGAACCCACAACATGAACCTGCTGTCATGAGTAAGAACAAAGAGTTCTA
TTTGGTAAAGTAGCATTTTGAAGTACTTTTTTCACATTCACCTAATATTA
GAAGTTTAATCAACATTAGAAATACATCTGCTCTTGACAGCAGGCAAGAG
GCAGGGAACAGGAACAGGAACAGGTCAGAACAAGGATTAACACACACATC
ATCGC

This is the primary representative sequence for this feature.

Sequence Length:

255

Repeat Motif:

(GGAACA)3