MK002215 ESSR-110 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK002215 ESSR-110

Identifier:

MK002215_ESSR_110

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.

Relationship:

There are 3 relationships.
Relationships
The genetic_marker, MK002215 ESSR-110, is adjacent to primer, ESSR-110-F.
The genetic_marker, MK002215 ESSR-110, is adjacent to primer, ESSR-110-R.
The marker_locus, ESSR-110, is an instance of genetic_marker, MK002215 ESSR-110.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2014 J.Parsons Th. SFF×HM2	Chr8	21.942	ESSR-110	MapViewer
2011 SS1061QTL	1061QTL-4	20.28	ESSR-110	MapViewer
2014 J.Parsons Th. Fig_2.4	Chr8	41.454	ESSR-110	MapViewer
2015 MB Merged	Chr8	41.454	ESSR-110	MapViewer
2015 SFF×HM2	Chr8	21.942	ESSR-110	MapViewer
2014 J.Parsons Th. Fig_3.5	Chr8	41.454	ESSR-110	MapViewer
2013 10117 B	LG08	66.7	ESSR-110	MapViewer
2011 SS1061	1061-8	5.996	ESSR-110	MapViewer
2013 10117 A	LG08	61.6	ESSR-110	MapViewer

Synonyms:

MK002215

Sequence Coordinates:

DCARv2_Chr8:20349231..20349469+

View location in JBrowse:

DCARv2_Chr8:20349231..20349469+

Sequence:

TTTCTCCATCCCTCCCTTCTCTCCCCATCTCTCCCTCTATATATAATCAC
ACACACACACATATACATACACAGTACATACATACACTCTCTTCTGGCCT
GGTTTATTACATCTTTTAGCTGATAAACCTAGCCAACATTGCCTTATTAC
AGAACAGATCTCACATACCAAACACATGGAGAAGGTTTTGAGATTGTGCT
TAGTGGGCCCCTTGTTTTTAGTCCTTGGGCTTCTTCCA

Sequences:

Primary genetic marker Sequence (238bp)

>MK002215_ESSR_110 ID=MK002215_ESSR_110; Name=MK002215 ESSR-110; organism=Daucus carota; type=genetic_marker
TTTCTCCATCCCTCCCTTCTCTCCCCATCTCTCCCTCTATATATAATCAC
ACACACACACATATACATACACAGTACATACATACACTCTCTTCTGGCCT
GGTTTATTACATCTTTTAGCTGATAAACCTAGCCAACATTGCCTTATTAC
AGAACAGATCTCACATACCAAACACATGGAGAAGGTTTTGAGATTGTGCT
TAGTGGGCCCCTTGTTTTTAGTCCTTGGGCTTCTTCCA

This is the primary representative sequence for this feature.

Sequence Length:

238

Repeat Motif:

(CA)7