Several types of transcript and expression data are present on CarrotOmics.
Assembled Transcript Datasets on CarrotOmics represents assembled transcripts or gene annotations of assembled sequences.
Published Gene Expression Analyses lists published literature investigating gene expression.
Expression Heatmap tool allows visualization of expression data.
The following assembled transcript datasets are available on CarrotOmics. Some of these are available in the BLAST tool and have also been loaded into the database and can be searched via the Genes and Transcripts and Sequences searches. If you have an assembled transcript dataset, and would like it on CarrotOmics, please contact us.
| CarrotOmics Analysis | Reference | Blast |
|---|---|---|
| 2011 Carrot EST Assembly | Iorizzo et al. 2011 | No |
| DCAR V1.0 Gene Prediction | Iorizzo et al. 2017 | Yes |
| NCBI Annotation Release 100 | NCBI | Yes |
| Nantaise Transcriptome assembly Arias et al. 2020 | Arias et al. 2020 | No |
This is a partial list of published research in the genus Daucus investigating gene expression.
| Year | Type | Abbreviated Publication Title | CarrotOmics |
|---|---|---|---|
| 2011 | Seq + Assembly | De novo assembly and characterization of the carrot transcriptome … | Analysis |
| 2014 | Seq + KASP | New insights into domestication of carrot from root transcriptome analyses | |
| 2016 | Genome Assembly + Annotation | A high-quality carrot genome assembly … | Project |
| 2017 | RNAseq | Fine Mapping, Transcriptome Analysis, and Marker Development for Y₂ … | Analysis |
| 2018 | RNAseq | … transcription factor genes involved in anthocyanin biosynthesis … | |
| 2018 | Comparative Transcriptomics of Root Development in Wild and Cultivated Carrots | ||
| 2018 | Assembly + RNAseq | Transcriptome profiling of genes involving in carotenoid biosynthesis … | |
| 2018 | … Early Steps of Carrot Polyacetylene Biosynthesis | ||
| 2019 | … root and leaf tissue-specific anthocyanin pigmentation … | ||
| 2020 | Identification of an SCPL Gene Controlling Anthocyanin Acylation … | ||
| 2020 | DcMYB113, a root-specific R2R3-MYB, conditions anthocyanin biosynthesis … | ||
| 2020 | Diversity and function of terpene synthases … |