Nantaise transcriptome assembly Arias et al. 2020 blast to DCARv2

Resource Type:

File

File Type:

GFF3

Download:


Download File Name	Available at	Size	MD5
438_2020_1707_MOESM1_ESM.gff3.gz	CarrotOmics	8.31MB	f4b37167b977099304f688807f62cfa0

Description:

The assembled sequences from the 2020 Nantaise transcriptome assembly were mapped to the carrot genome assembly DCARv2 using blastn. Resulting hits were converted to gff3 format for use in the CarrotOmics JBrowse. This file can be downloaded from the download link.

References:

The following records refer to this file:


Analysis	Nantaise transcriptome assembly Arias et al. 2020 blast to DCARv2
Journal Article	A de novo transcriptome analysis revealed that photomorphogenic genes are required for carotenoid synthesis in the dark-grown carrot taproot.
Organism	Daucus carota subsp. sativus

Analysis:


Name	Description
Nantaise transcriptome assembly Arias et al. 2020 blast to DCARv2	The assembled sequences from the 2020 transcriptome assembly were mapped to the carrot genome assembly DCARv2 using blastn. Resulting hits were converted to gff3 format for use in the CarrotOmics JBrowse. This file can be downloaded from the link below. Data from this analysis can be viewed in JBrowse here.

Organism:


Name	Common Name	Comment
Daucus carota subsp. sativus	Carrot	For a general overview of carrot, see the Carrot Facts Page

License:


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