DCAR_025321 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_025321

Identifier:

DCAR_025321.gene

Locus Tag:

DCAR_025321

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_025321, is a part of gene, DCAR_025321.
The genetic_marker, MK000038 ZDS2, is located in gene, DCAR_025321.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_025321	DCAR_025321.mRNA	mRNA	DCARv2_Chr7:26029515..26039545

Sequence:

ATGGCAGCTGCTACTTCCTCTATCTATTTTCCGGCCACTTCCCGCCCTGA
TTCCGCCGGAATTTCACTCTCCCGGTGCCGTCCGTTAGCTCAATTGAGGA
CTCATAGGGTCATGGTTGTTCGTTCCGATTTAGAGAAAAATGTCTCCGAC
ATGAGCACCAATGGTATTATCACTCCACTAAAATATTTCTCAAATTTGTT
GTGTTTTTTCATGGAGAGTAATTGTCAATTTATGTTGTGATGATTGGGGC
TTTTACATGTGTTCTTGATGTGTTTGCGTAAATTGAAGTTACTATCGAGT
TTTGATTGGACTGTCTTGCTGTCCTGTGTAGTTTGTGAGTGTGCATTGGC
TTGAGATGAGGGAAGGCATATTTTTGTGTGTGTTATGAGATTTTAGTGGC
GAGAATATGTCCATTACATGGTTGAATTTCGCTAGCTGTGTAGTTTTAAG
ACGTGTTTTCGTAGTTTGGAGTGGGTGGAGAGAAGATGAGTTTAGGTTTT
TCAGGTTGAAGCGTTGTGTTCCAATGATGCAGAAAGTACATGTGGATTAG
TTTAGAGCAGAGAGATTATATGGGAGAATAGCATTTTTTGGTCGCAAGTT
GACATGCTCAATGTATTTATGTACTTATTACTTCCATTGGATTTATAGGG
ATGTCAATTGTGTTTGTGAGGAAAAGTAAAGTGGTGCATGAGAAGCGGTT
CATGTGGTCTTTAGTTCCATATACCTAAATTGGGTCATTAATCATTCAAT
AGAACAATTAGTGGTATTATTATATCTGGGATCTTTTGAGGAGAAATGTT
ATTATTGTATTTTTACAATATTTTATTTTATTAGTTGATATTCTCAGTTT
TGTGTTCTGTGCTTTAGCATCACACTGACCTTTATAATTCACCTTTCAGC
TCCAAAAGGGCTATTTCCACCTGAACCAGAACATTATCGTGGACCAAAGC
TAAAAGTGGCTATTATAGGAGCTGGGCTTGCGGGCATGTCAACTGCTGTT
GAGCTTTTAGATCAAGGACATGAGGTTAGCAACCCTTCTTTTTAATGCCC
TTGTTATTGCCAAAGGTATTCAGCATCTCTAATGTTTCTGCAATATTTGC
CCTTCTTGAATATTCTCTAGATACAATTTTAGAGCAGAGTAGATCATAGT
TCATAAATTTTATCTTAAAGCAGAGTAGATTCCGTCACACTAAAATATAT
TTTAGAGCAGAGTAGATGAAAATCATAGTTCATAAAACAGAGAGAAGAAA
ACACAATCAAATCTCATGTTCTGTTTATTCCATCAAGTACTGTAATTCTT
TTCTTGACATATGAGCTCACATCTATGCATGGTTGATTCAGGTGGATATA
TATGAATCAAGGCCTTTTATTGGAGGGAAAGTGGGTTCTTTCGTTGACAA
ACGCGGAAATCACATAGAAATGGGACTTCATGTATTTTTTGGTTGCTACA
ATAATCTTTTCCGTCTTCTAAAAAAGGTAAGGAAAACTTTTCCAGTCACA
AATATATATATGAGTTATTCATGGTGATGGCTCTTGGTCGTATATTGATT
CCATATTTACTTTACCTTGTTAGTGTTTATTTATATAAAGAAAATGATAC
CATGCTCATATATTCTGTTACGAAATAAGCTACATCTTTGGATATAGCGA
TGTAACTCAACATGCTCTAATACACAAAACTTGGGACTGGTAGTGCTTTA
ATAGAATACATGTTAGATGCACTCTTCTTGAATACTGGTGCATTATACTG
GGTAAATATTTTCCATAAACAACTTACTATCAACAAGATAATATGCGCCT
TACAAAAAAAAAAAAAAAAAAAAAAAAGCAGAAAGTAGTAGAAGCNACTT
GGGACTGGTAGTGCTTTAATAGAATACATGTTAGATGCACTCTTCTTGAA
TACTGGTGCATTATACTGGGTAAATATTTTCCATAAACAACTTACTATCA
ACAAGATAATATGCGCCTTACAAAAAAAAAAAAAAAAAGATAATATGCGA
AAGTAGTAGTAGTCTCAATAAATATTATACGTCACATTACACTAGATCTT
AGACTCTGACATGTTATCATACAATATTTGCTGATTGATTGTTGGTGCAA
GACAAAATACAGGAGAGATTAAATTTGAGGGATTAAAACAGCTTGCTCAA
ACTAGGGTAGTTATCTCTCTTTTTGGTAGTCTACCCTCCAAACCAAGCTT
TTATTCTCAAATCCAGAAATATATTGGAAAGGTGGAAGAAAATTACAGTT
TAAACATTTTTTGCTAAACATATAACATTTGAAATAAAAATTTTGCCTCT
GGGAAATCGGCATCTCATACAAAAGAAATTTTAGAAAATACCCCTTTTTG
GAAAATGGGTATCTATTACAAAAAAGATTAAAAAATCAATAGTTCTATAT
AATAGATGAGTAATTATAATAAACAAAAGTTTGCTTGGATACCCTTATTC
CAAATGTGTATCCCTGAATCCAGATGACAAATATGTACCCTTTTCATAAT
TAAAATAAATTCCGATTGGAGACACAGTTGCCAGATGCGTATTGAATATG
GGTATTTTTGCTCTTATTAATTTTTATATTAAAAAAAAAAGTAAAAATGT
CCTTCACCTGGTTTTTTTCATATTTGAAATAAGTGGGATATCTGAGGTGG
TTAACGACTTGATTACCCATGGTAATTGAAGAACTTGATGTATCGGTACT
CCATTTGTTTTCTTAGAATGGTCGAGATCTTGCACTTTGGCACTCATAGA
TCCATTGGATGATCAAATGTGTTTCAAGTCGTAGTTAACTCTATGGATTT
GTGTTCTGCAGTAATCAAGTAATATTTGAATAGAGAGCTTGAATAATTGA
ACCTTATTCTCTGCAAATTTCTATTTTATAACTGAAGTTCACCGTTTGAA
TTTATTAAGATTCTCACTAATTTTTACAATCTCTACTTGATAGGTTGGTG
CAGAAAAAAATCTTCTCGTGAAGGATCATACTCACACTTTTGTAAACAAA
GGGGGTGAAATTGGTGGTATAGTTTGTGCTGACCTTTTTCCCTTCAATCT
TGCACATTTACTTTTGACTGAAAGAATGATTTATATGTCGTATAAGGGCT
TTGATTACATTATATGTTTACATTTATATTTCCTTCTGCAGAGCTTGATT
TTCGGTTCCCAGTTGGAGCACCATTACATGGAATAAATGCTTTTTTGACT
ACGAATCAACTCAAGGTACTGTTTAATCTATTTGTACTGCATAATTTTCT
TAATTAGTTGGAAAAGATTGATGCCCATTGCAACTAGTTCTGTGGTCTAA
TTTATGTGCCGTATATGTGCTTTGGAATGTGATCTAGAGAATCATAGTCC
TTGTACTTTTACTTCCATTTGGTAAATCATATAACTATTAAGTACTTTTT
CCCGTTGGTCAGGCAATCTTTTGAACACAGAGGGCCAACTACATATTTAT
TATATGACCAGAACACTAGTATGTCTATGAGTAAAATAATATATACATCA
ATTTTTTTAAGAATTTGCACATATTTAAGCACCAATGTTATAAAATTTGA
AATGTCTTAGGCCTGTACTCTTAGAGCTACAGATTCGGAACACACAAGTC
ATACATAGTATATGAATGCACGATGTAAAATAGCCTGTCACGATGTAAAA
TAGCCTGTCATGCTTTTTTGATAGAATGCTTGACCGTCCTATTAGTAGGT
TTTACTTCTATAGAGCTCTTGTGACATATAGGGCACAGTTTTATCCTAAC
ATTGCTATACCAGAGTTTCCAGTTTCGTCTGTGTCTAAAACTAGGAATTG
TGCATTTACCTGAGCTGCATATTAGTAAAGGAACTCTAATTACCAGTAGC
ACAGGTAGAGCAATGGGTGGCACAGACTGTCATGTCATAACATTTTCTTA
AGTAGACTCTCTTTTATGTTCCTAATTGCAGCTTCACTCTCAAAATGCCA
TAATTTCAGCACATGATATATTGCCAGTTGTCTATTCATGCTGTCTGTCT
ATACTCTGCCTTCAATGTCAATTTGGTATTTTTTTTCTTAGAAATATTTT
GTTGTCACACAATATGCCTACAGCAAACAATGCTATATTCTATCAATAGT
GATATGATGAATATAGGTTGCTGGTCCGGAGCATGTCATACTTCATAATA
TGTGTTGCTTGCAAATTCGAAAGCCTTCATTGATATCCAATTTGATATAT
CTAAAGCAACTAATTAATGCACTTATCTCTTACTTGTAGTCTTGCATGAT
GTGGTTCTGATATATAATTCGTATTTGCAGACTTATGATAAAGCAAGAAA
TGCTCTTGCCCTTGCCCTTAGTCCTGTTGTGCGTGCACTTGTTGATCCAG
ATGGAGCAATGAGGGACATAAGAAATTTGGATAATGTATGAGATATACCT
AGTAAACTAGCTCTAACTACAATTTCATCATGAAGAACAGAACTTTTTAA
AAAAAAATAATGTTTTTCTCGACTGTTTCTTTGTTTCAGATTAGTTTTTC
TGAATGGTTCTTATCCAAAGGGGGCACACGCAAGAGTATCCAGAGAATGT
GGGATCCTGTTGCTTATGCTCTTGGGTTTATTGACTGTGATAACATGAGT
GCTCGTTGTATGCTCACTATATTCTCATTATTCGCAACTAAAACAGAAGC
ATCTCTTTTGCGCATGCTTAAAGGTTCTCCTGATGTTTATTTGAGCGGAC
CAATTAGAGACTACATTACACAAAAAGGGGGAAGGTAAAACTGAATGCCA
ATGATCAGATCATCATGCAATACTATGTAATATGTAATGGTACCTTATGT
GATACTAATTTCTCTAGAACAACAGGTTCCACCTCAGGTGGGGATGTCGA
GAGATTCTTTATGAAAAATCGAGTGATGGCCAAACATACATATCAGGAAT
TGCCATGTCTAAGGTAGAGTGCTTTTCATTCTGTTGTGCTAGAAATTTAT
TCACCCAATTTCAAGAAAGCTTAATAATGTTCCCTTTGTTGTTTCTGCTA
TCATTTTTAATAAATCAAATCTAATGAACCCAAATTCTGAAATTTACAGT
AGTTTAGTTGGTTTTGTGGATTATTTGAATCTGAAAGGATAAGTGCCTTC
TATACCCTTGTCTGTTTTCTTTTCAGTCATAGCCTTGCAATTAGTAGTTT
AAATCATCAAATGTTCTCTATCTCTAGTAGTCAACATTACGTTTCAGTGG
AGTATTCAGTAACATATGCTGTCAACAGTAAACAGGATTCCTGATCTATC
AGTATATGACTTAGAAATACCGTTAAGGATGAATTAATCTCTTTGATTAC
ATAATTGGTCCTGCTTTTTAAATCAAAAGGGATTAAATTGCAGGTACAAG
TAAGGTCAATTAAAGATGAGAGAGGACATGATATCTGGAGGGGATGAATT
AATAGTCACAAATCAACTTAATGCAGAGCGCATTCAGTAGTTAGTCTATT
AAGATGTAAAAAGTATCTAGCCTTTACGCCTTTACCAAACTAGAATATGT
AATACTCTTCTGTTACAAATCATCCTTGTAAATATCAATTACCTAGTGTA
AAAAAATGCAATGGACAGAGAGATTATGGCGTTGAGGTTAAATGAACCAG
AAAGCTACTTATAACCTAATTTGACCAGAAAAAAATAAAAAAAAATCTCC
GCTTAGAAATATAAATAATTTTTTTCATTCTACTAAAATACCCTTATGAC
TTGTTTGGAAACATGGATTTCATATGAAATTGTAAATATGAACTAAATAC
ATTTTTGTATATTTGAATTTGATGAAATTTCAAGTCATTTAAATTTGAAT
AGAAATTTGAGAATGAGACGTGACAATTTAATTCACGTCATTTGAAATAA
ATTTCATGTTACCAAAAGCAATCTTAATTTTATTCAGAAGTAGAACCCCA
CTCCACGCTGTATCAAGAAATAAAAAGTGGCCAAGCAATCAACTAAGTAA
TTATTATTCTTGAAATGTAGTAATTGTATTAAAAATAATAGACGAAAGAC
GAACAACAAGATATGAGACATCTTTTTTGTTAGTCCTTGTTACAATACAA
TTGTATCCTGAATCTGATCGAAATTCCGGGTCAAATCTTGATAGAGAAGC
CAAAATAAGGCCATTCCAGTGGAAACACAACATACTTAGGCATCCACAAG
CTCACAAAGTGCCCCAAAACAGTACGATTTTATTATGGTGCTAGTGGGAA
AGGTTAAGCTTATATTCTGATAAAAGTGTCCGATGGAACAGGGTGTTACT
GCTCTGGCAAAAAAAAAAAAATCTAAGTTTTGGCTTTGTATGGCTTGTGC
TTCTAGAATATGAAAAAAGTAACTATTTCTGGCTCTTAACGATTGTCAAA
GAATTTTCGATTCAACCTTTTAGGTTCTTGTGATGTGATTTTAAAGTTAT
TGCTATCTTGTTTTCAGGCAACTCAAAAAAAAGTCGTGAAAGCAGATGCT
TATGTTGCAGGTTTGTATTCTCTCCTTTCGTGGTTTCTATATTGGTGTAT
ATCTTTCCATGCAAGTTATGTGACATTTACCATGACAAAGATGTCAGCCC
TAGGGAATTACTGTCATACAAATCTGTACATATAGTTAACTATTCCCGTC
TCTTTTTGGTCACCATGTTCTTTCCTTCTTTTATTATAGCACAAATTAAA
TGTAGAATTAGTCACTATAAATCTAAGGGTCCAGGTCCCTGACATACGTA
TGCCAGGGACCTGTTAACCAACAATTAGTTTCCTGGCCGTTGGATGAATA
TCCAGTGGCCAGGATTAAAACAAAAGTTTAATACGTCCAGCGCGTTATAA
TCCTGGCCGCTGGATATTCATCCAACGGCCAGAATACTGAGTGCTGGTTA
AGGGGTCCCTGGCATACATATGCCAGGGACCTGGACCCTAAATCTTATAA
AATCATAAAGATGTCATATTAAAAACACCATATGTCCATATTCAATATTA
TTAGGTAAGAGTACTCTTTATAACTTGTATAAATACAATAAAACTACATA
AAATTATAAAATTGATACAAAAAACTCAAAATCAGAGCTGAACCTACAAT
AATCGAGAATATTGCATCTCCAGGGGACATTGCAAAAGCATATCAATGGC
CTGAGATCTTAATAATGGGGCACTTAACTATTGATACAAAGCACAAGTGT
AGATCTCTGTGTTGTTTTGGCATTTCATGGAGCGTGATGCCTAAAATGCT
AAACAGTAGATTTTTAAGCACTCAAATCTGTAGATCACGCCAGATTACGG
AGTTACGAGCAAGCACATTCTCTGCAAATGACACTCGTATAAATACCTAA
AAACTGTTGGTAGAGGCACAGAGATTATAGGAAGAAACATATGCCAATAA
GATACTGAACATCTAAAATTAAAATAATGGATAAAAGTATTATATTTTAG
TACATTCTTATAAGTTATAACCCATTATATCTGACATTGGCTCGCTTGGG
ATCTCATCCTGCCCATTTACTCGGTGGCTGTGATTCTGACCCAAGGAAAG
ATTATACTGTTATGCAATAGGAATAGATGAACTATGAGGAGAAAGAGGGA
GGCCACTGCTTTATTTATATCGCGCCAACTATTGAAATGGAGTGATGTAA
AATTTGAAGAACTAACGGAACACATTTCAACTTTTCAGCATGTGATGTCC
CTGGAATCAAAAGACTACTGCCTTCACAGTGGAGAGAATGGGAGTTCTTC
GACAATATATACAAACTAGTTGGTGTTCCTGTTGTAACTGTTCAACTAAG
ATACAACGGCTGGGTTACAGAGATGCAGGATCTAGAAAGGTCAAGGTCAG
TATTTCTTTTATTTTTTTTGCTAATTTGAAAGTTGATTATTACTATTTAG
ACAGATAATAAATTTCTGAATATCAGTAGTGCTTAGGCTGGAATGATAGT
ATGATAGGTGATTACCTGCAGGAAAATTTTCTTTTGTGTTGCACTATATC
GGATTCGAGGGAAAATAAACAAATTGTAGTATACTGTATTTAAAAATCTT
TGTATGTTGTATCTGACATTTTTTTTTGTTAAATATGGGGAAAAATCAGT
ATAACCAAGCAATATTTAAAAATATGTGTTTCTGGTCAACAACCGAAAAT
CAAATTCTAAGTACCAAACTAATCATATATTTTGCTAACCCTAAATTGGA
ATGTTATATTTGTACATATATATATATATTTCTTTATTTTGCTTTTTGCC
ATGGAATGTTAGGCAACTGAGGCACGCAGCAGGACTGGATAATCTTCTTT
ATTCCCCAGATGCAGACTTCTCTTGTTTTGCAGACCTAGCACTTGCATCT
CCAGAAGATTACTATCTTGAGGGGCAAGGCTCTTTACTCCAGTAAGATTC
CTTTTCCCTTCTGACTAGTCATCATCTTAATACCAGGTATATTATTGCTG
TCATTTTTGACAAGACTTCCTTAGCAAAACGTATACCTGTCTTCATATTT
TTAGGAAGTAGATTATAATACTCTTGTTAGAAAATATTAAAACTGTTTAA
TGCAGCAATTCATTGTGGCAATCTCCTAAATCAGTTTTTTTTTTTATAGA
TGTGTGCTTACCCCTGGCGATCCATACATGCCTTTACCAAATGGTGAAAT
CATTGAGAGAGTTACAAAGCAGGTTTGTCCAATTGTATACGGGATTCATT
TGTTTTTAGCAACTTCAACCACATTTTTCATTCATAAGTAATTTTAGCAT
GCACCAGGATGTGCAATTTAGGTCCGTAGACATGATGTGTCATCGTCTCA
CATCAATTAGTTATATGTGAGAACTTGAAATTTTGGTGGAAGTCTGTAAT
CTCCTTGTCTACTGTAATGGTATTTCAAAATTTATATGAACAGATTTTAC
ATAACCCCTGTTCGGACATTCCTTTTAGCCTACCAAGTACACTACTCTAT
GGTTCCTAGATTCCTGCTATTTTAATTCCCGACCTACACATGAGAGGTCT
GTATTGGGTCATATATGACTCCTTTTGATCTTTAATATTATACATTCTAA
TTTAAAAAAATATATTGAAAGGTGCTAACAGAAAGACTTCTACAAGATAA
TTCCTTTTTATTATTATTTTGAGTACATGTTTATATGACTTTATATTTCG
TTTTTTTTATTTTGAGTACATGTTTATATTTTTCATCTAGTAATTTCTTT
ATCCAAATAAATATATGGAAATAAAATAGACAAGCACTCTGAATTTGCTA
ATATAAACATCTAATGTTAAAGACTAGAGGTGGTAGTAGCTAGAACTTGG
CATTAGAATTTTCCCAGCTGATTAATTTTCTGAATTTGCCTCTTTTTTAA
ATATCAAAAAATTGTGAATCTTTCTCAGGTCTTGGCTTTGTTCCCATCCT
CCCAAGGTCTTGAAGTTACATGGTCATCTGTTGTCAAAATTGGCCAATCT
TTATACCGTGAGGGGCCTGGTAAAGATCCATTTAGACCTGATCAGAGGAC
CCCTGTTGAAAACTTTTTCCTTGCTGGATCATATACGAAACAGGTGACAT
CTTAATCCAGCTTTGTGTATACAGTATACAGTATGTGCGATGATCGGTAT
ACAGTATGTGTGATGATTTCAGAATGCAGTTAAACAACTTACAATTGACT
TCTTATACAATTATAGCATATTGATAAAAACATTATGACTTATTCATAAT
GCACTCCTCGTGACTGATGGATGTGAACTGGAACATACTTCCGAAATAGT
AGGCATTGACACATAGTTATGCATAATGATGTATTATGTTTTTTGTTTTT
TGCAAAAATAATGATGTATTATGTTAATTGTTAATATTTCTGCAAAATAT
AACATACAGAATGCAATATTGCTCGATCTGTAGAGGCATTATATATAGCA
TTCATATAAAGTTTGTTATTATTACAGGATTATATAGATAGTATGGAAGG
TGCAACTCTTTCAGGCAGGCAAGCTTCTGCCTATATATGTGATGCCGGAG
AAGATTTGGTGGCCTTGCAGAAGAAGATTGGTGTAATTGAGTCCAACACG
CCTACAGGAGCTGAGTTGAGTCTTGTCTGA

Sequence Length:

10030

Sequence Checksum:

b3968d31d59ea99cde20e6c8d3daf178

View location in JBrowse:

DCARv2_Chr7:26029516..26039545+

Cds:

>DCAR_025321cds ATGGCAGCTGCTACTTCCTCTATCTATTTTCCGGCCACTTCCCGCCCTGA TTCCGCCGGAATTTCACTCTCCCGGTGCCGTCCGTTAGCTCAATTGAGGA CTCATAGGGTCATGGTTGTTCGTTCCGATTTAGAGAAAAATGTCTCCGAC ATGAGCACCAATGCTCCAAAAGGGCTATTTCCACCTGAACCAGAACATTA TCGTGGACCAAAGCTAAAAGTGGCTATTATAGGAGCTGGGCTTGCGGGCA TGTCAACTGCTGTTGAGCTTTTAGATCAAGGACATGAGGTGGATATATAT GAATCAAGGCCTTTTATTGGAGGGAAAGTGGGTTCTTTCGTTGACAAACG CGGAAATCACATAGAAATGGGACTTCATGTATTTTTTGGTTGCTACAATA ATCTTTTCCGTCTTCTAAAAAAGGTTGGTGCAGAAAAAAATCTTCTCGTG AAGGATCATACTCACACTTTTGTAAACAAAGGGGGTGAAATTGGTGAGCT TGATTTTCGGTTCCCAGTTGGAGCACCATTACATGGAATAAATGCTTTTT TGACTACGAATCAACTCAAGACTTATGATAAAGCAAGAAATGCTCTTGCC CTTGCCCTTAGTCCTGTTGTGCGTGCACTTGTTGATCCAGATGGAGCAAT GAGGGACATAAGAAATTTGGATAATATTAGTTTTTCTGAATGGTTCTTAT CCAAAGGGGGCACACGCAAGAGTATCCAGAGAATGTGGGATCCTGTTGCT TATGCTCTTGGGTTTATTGACTGTGATAACATGAGTGCTCGTTGTATGCT CACTATATTCTCATTATTCGCAACTAAAACAGAAGCATCTCTTTTGCGCA TGCTTAAAGGTTCTCCTGATGTTTATTTGAGCGGACCAATTAGAGACTAC ATTACACAAAAAGGGGGAAGGTTCCACCTCAGGTGGGGATGTCGAGAGAT TCTTTATGAAAAATCGAGTGATGGCCAAACATACATATCAGGAATTGCCA TGTCTAAGGCAACTCAAAAAAAAGTCGTGAAAGCAGATGCTTATGTTGCA GCATGTGATGTCCCTGGAATCAAAAGACTACTGCCTTCACAGTGGAGAGA ATGGGAGTTCTTCGACAATATATACAAACTAGTTGGTGTTCCTGTTGTAA CTGTTCAACTAAGATACAACGGCTGGGTTACAGAGATGCAGGATCTAGAA AGGTCAAGGCAACTGAGGCACGCAGCAGGACTGGATAATCTTCTTTATTC CCCAGATGCAGACTTCTCTTGTTTTGCAGACCTAGCACTTGCATCTCCAG AAGATTACTATCTTGAGGGGCAAGGCTCTTTACTCCAATGTGTGCTTACC CCTGGCGATCCATACATGCCTTTACCAAATGGTGAAATCATTGAGAGAGT TACAAAGCAGGTCTTGGCTTTGTTCCCATCCTCCCAAGGTCTTGAAGTTA CATGGTCATCTGTTGTCAAAATTGGCCAATCTTTATACCGTGAGGGGCCT GGTAAAGATCCATTTAGACCTGATCAGAGGACCCCTGTTGAAAACTTTTT CCTTGCTGGATCATATACGAAACAGGATTATATAGATAGTATGGAAGGTG CAACTCTTTCAGGCAGGCAAGCTTCTGCCTATATATGTGATGCCGGAGAA GATTTGGTGGCCTTGCAGAAGAAGATTGGTGTAATTGAGTCCAACACGCC TACAGGAGCTGAGTTGAGTCTTGTCTGA

Pep:

>DCAR_025321pep MAAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSD MSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIY ESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLV KDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALA LALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVA YALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDY ITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVA ACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLE RSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLT PGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGP GKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGE DLVALQKKIGVIESNTPTGAELSLV*