Resource Type:
Gene
Organism:
Name:
DCAR_004665
Identifier:
DCAR_004665.gene
Locus Tag:
DCAR_004665
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_004665, is a part of gene, DCAR_004665. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_004665 | DCAR_004665.mRNA | mRNA | DCARv2_Chr1:50199262..50212204 |
Sequence:
ATGGAAACGACGCCGTCCTTACTCCAACGCTACCGCCGAGATCGCCGGAA
GCTCATCAAATTCTTACTCTCTCCCGCCGCTGGCTTCGTCAAAGAGCTTC
GCAACTCCTCGAATTCTATCTCTAGCGTTGATTATGATACTCTCAGCGCC
GATTATATTCTCCACTGCATCCAATCCAGTATGCTCATTATAGCTTATTC
TCTCTCTCTCTCCCTCCCTCTCTCTCCCTCCCCCTCCCTCTCTCTCTCTA
CCCCTCTCCCTCCCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCA
GCATCCAATTAGTAAGCTATATATCACTTGCTTTTTCGCTTTAATTCAAA
TTTAGCATCTATATAGTTGCTCTACCTTTTCAAGTCACTATTATCGTATC
ATATCAAATTAAGATGAAGTTAAGCTGCAATTCATTTTATAATTCAGATC
AATCTAGTAGTTTATACCATTGCATAAATTCACTTGCTATCGTTTTGATT
ATTTAAACTTAGCACCTGTCATGTTTGTTACCTAATAGAATAAGCTTACT
TTCATGTTCTAATGTTTAGCATCCGTAACTGACTGTAAGGACTATTAAAA
TGAGTAAGCTAATACAGTTATATATGTGTGCATACATTCACTTGGTTTGT
TTTGGAAATTGTGAATTTGGCTTATGTGTTCTCTAAATTGATAAAAAGTT
CCGGTCCCAAGCTGGGACGAGTATTAAAATCTAATAACCCCTCTATTGTG
ATAATTAATATATTTTAAGAAAATTGTAGTGTTAATATTGGTCCCAACTT
TCACATAAAGTGATATTCTCAACCATATACATGCTTTTATATTTATTTTG
TAATTATAAAATATTTTTAATACTGATTTGTGCAATTTTTTCTTGTTGAA
TAACTTTCACACTATGTATTCTCATGTAAATTATCTATAATACATCTGTA
TGATCTCTTTTTTGTTTTGGCACAAGATACATATTCATATAATGAATTGT
ATCATAATACAACAAGCTATAAGCACCACGAAAACTCCTGCTCTGCTTTA
CTTTGTGTCATGTACCCTGAAAGATACAACACAAAGAAAATAATAAGTCC
GTAGAGCCAACAAGATTATGAAAAAGATTTAAACCAACAGATAAAATAAA
GAGTCAATTGAATTATAGTTTAAAAGAGGAAAAATATGAAAATATTATAA
AGATTCTTAATAAATAAGGTAAGCAAAATCAAGAAATTATATAAATTGAA
ACATAATAAAATCTACGCCGAAGGGATACTGAAATCTGTTTGGTTAGATA
CCTAAATTTAATACTTAATAAAATATAAATATCACAAGAATATAACTAAA
TATAAATAGCAATAAGTACATAGTAATACATATTAGTAAATATAACCTGA
TATTAAAATTCATAGAAAGATAAAAAGGATAAATAAGCCATCAAAATGAT
ATCTTTTATATGATATTTGCAATAAAATTTCATCAATTTAGGGAATGTTA
TCTAGTTCTTATGTGTTATTTTGACCTTTCAAGTGGCAATGCACATAAAT
GGTAGTATATCATTTGAAAATTCAAAAGAATAATGTATATAATATTTACT
AGTATGTAGAAAATTAATACTCCCTCTGTCCCCCTCAATTGTTTACATTG
GGGGACGGGGCCTCGGCATGCATTCTAATGCTCTCATAAAACATAGTTTG
ATAAATTATTTTGAATTTTTTTCTTTTATGAATAAATATTTACTGTCTAA
ACTTTTATACAAAAAAGAATTTTTTTTTAAAAAAATTACGAAAGTATGTT
TTATATGCGCCTTAAAATGAGTGTCGAGCAATGCAAAAAAAGTGTAAAGA
AATGAGAGGGACAGAGAGAGTAATAATTATTTTTATAAAAAAATTAGAAT
CCTCTCTTATGTAATAACCTCCATAAAGTGATAAATTTCTCCGGTCCCCA
GGATATCACTTCAGAGGGGTTCTACTATATTACAATTATAAATATATCTA
TTAGGTGATGTTATTTCAGTCTACAACTCTTCTAATCAGCTAGAAAATAC
CTGTCATGGAACTACCAATCACCAGTCACCAGTTTTGTAATGCAATGTTC
TTATTTGAAGTACACCTCTACATGTAGTTATTTATGAGAGTTAATTTTAG
CCTTTCCAGCTAGCTTTATATTTGATTTATGCTTTTTGGTTTATGATAAT
TAGATGGAATTCTTGATATATCCGAGGCAACAAGGAAGTTCACAGAAGAA
GCTCAGTATCCCATCACGGTAGGATTTTGCTGCCTCAGTATCTTGTTTTG
TTATTGTATTTGATAATGCACATCTCAGTCCCAATCTTAAGTTTCTCCTT
TTCAGCTGTAAATATGTGTGTGTGTGTGTGTGAGAGTGTGATATTTTTCA
ACTTTTGAAGTTCAATATACAGTCTTGTGCTAAAAATGAACACTAAGAAC
TCATCAGAATCGTGCATTGTAATAATCCAGTGGGTCTGAAGTTATTGTTT
ATTATGATTATGACTAGTAAAATTTCATAGTCTAACCTGTGACTTGTATT
GTACTAGTATAAACCCAGATTTGTTGCTTGTTTTCTTTAGAGTTCTTACG
AGGAATGTTTTCCTAGAGCTTGCATACATATTATCATCTTTACTGAAGGG
ATTTGCCTTTACGTGGGTATCCTCAGTCACCAACCTAAATGTTACTTTAA
TTATGCATTATTCTCTGCAGATGGATTCTGAGTTAGGGGATACCTATTTC
CTTGTTTCAGATCCAGAGTCAGCTGGATCTCCTCCTCACCGTGCTCCTCC
TCCGATTGTTGTAAATCATTCCAGCAGTAATGACTTGCATCCATCTGATC
TACATGACAGTTTGATAGCTCAAAAAATATCTGTCCCCAGTCATGAATCT
AAGGACAAATATGCAGCTAATAAGCAAAAATGGAAGCCAGTAAATAGGGT
TCTTTCTTTAGGATTACCTGCGCTGCATACAGGTATCTATTTCTCAACTA
ATATCCTTAAAAATGTTAAGAGTACTTCTATATTAATACTTTAGAAGTGG
TATAATTTTGGTGTTTCTGGCTATATTTTGTTTTTGCAATTTATATATGG
TCTACAACGCCTGAAAACTTTTTCTTTTGAGTGACTGATATATACTTTTA
GAACTTCTAAAGGATTATCGGATGATGATTTGCGGGAATCAGCTTATGAA
ATACTGTTGACGTGTATGGCATTTTATGGGTATGTCATTATATGTCACAT
AATCTTTACACTTGCTATTACTTAGTATGCAGTTTTACCTGTCATGTTAT
ATCTCCTGATCTGACCTGATCACCTGTCTTTATTGGTGTTTGTTAATTGA
TTTAACTTCCGTTCTTTATTTACTACTAGGCTTGAAATATATATTTTTGA
GGATCAAAAGAAAGATAAAAGTTCAGGGTTTCTTGCTGGGTTGAAGAATA
AAAAGGACAAAAAACATCCTCGGTCTCAGTCCCAATCTCCTGAAAGACAT
GATGAAGTCATTAACACCATTCGTGTTCAGATGCAGGTCAGCTTTTATAG
TTTGAATTACTTTTATGGCACTTGAGGGAGGGAGGTGTATATAACTATAT
CTATCTATCTATCTATCTATCTATCTATCTATCTCTCTCTCTCTCTCTCT
GATGAGGGAGGGAGGTGTATATATCTATATCTATCTATCTATCTATCTAT
CTATCTATCTATCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGT
AACTGACCACCAAAATACACTTTTTAGTGTATGAATTATTGAATTATTGA
TATAATCTTGTTGTAGAATTATAGTGCTCGTCAGTGTACCCAAAAAGCCT
ACAATTACTAAGTCAATACATGGGAGACTTAGATTACTAAATACTTGACG
TATAAATTTGTTCAGTTTTCACTTGTGAAAATCTGATTAGTGTGTCGACA
GTTTGTCAGTTTCACCACTTTTGTGGCTTGAAATATGTGTAGTTTTTGAA
TCTCACTTGGATACAGAATTGAATAGAGATTCTCCATGGTTCAGACCTTT
GTTTGTGTAATAGCTGACAATTTTTATTTTCTCTTCCTAGATTTCAGAAG
CAATGGATGCTTGTGTTAGGCAAACATCAATGCAGTTTGCTTCAAGAAAA
GCATGTGGACAACTTGATATTCCTCAGATTTCACTGGGGCTTCTGAATGG
CATATTTAAGTCCGACTTTCTTTATGAAAAACCTTATATGCAATGGAAGA
AACGACAAGTAATCAAACCTTGTCGCAATTTGATAAGTTCATAGTATTTT
ACAAATTTTGGTGGTTTTGTATTTGACATTTGACTTTTAGAATGAAGTTG
TGCAAGTAGATTTTTAGATCTTAATTGTATAAATTATTTTATTTGGAGTT
TTTATAATAGTATTTTAATATTCAGCTATTCATTGTAACTCTATGATTTT
GTTGTCTAGGCAAATATTCTTGAAGAAGTCTTTATTTCTGCTAATCATCT
AATAACTGATAAGCAAGTAATTGACACATTACTTGCAAAGATGAACAACT
CTGAGGTACTTCCACATTAATAGGGCATCTAAAGGTGATCCTTAATCAGT
TATTTGGTAGCAATTCTTATTTTGTCATATTGCAGGAATGGGACAACCTA
ATGTCGACCTCTGAACGTACTGAGGTCCTGGCAGCTATCCGCCAGGTGTC
TTTGCTATTGTCCTCTGTTAATGGTCATTTTGGTATTCAAGGTGAAACAT
GCTATTGGGCTACCAGTTATCACTTTAACATCAGACTTTATGAGAAGTTG
CTTTTTGGCATATTTGACATTCTAGATGAAGGCAATTTTATAGAGGTATA
TGATTGTTGTTTTTTTAGTTGATGTCTGTTGTATTGTCGAACACCAATAA
ATTACTCAGATATTATATTATATAGGAAGCTGATGAATTTTTGAAGCTTT
GCAAGTTGACGTGGTCTACTTTAGGAATTACGCAGAAAATGCATAATGCA
CTATATGGTTGGGTGCTGTTTCAACAGGTATAAATTTCTTTCTAGTAATG
GGATGAAGTTCCTAGAAACTACATTTGAATTTCTATATCCAAATTTTGGA
ATAAAGAAAAATGAGTTTTAGCATTGTAAAACATTAAAGTAGAGTGGGTG
ATTATAAAATTTGAGGTCTTTTATACTGAAATGTGAATTAAGGAAAAGAT
ATATACATAAACCCAATTTGTGTGACAAATACATCTCGAGGACCTGGTCG
GCAAGACAAAATTGCATGAATTAGGGTCACTAATTGTAAATTTCGGTTGA
ATCTGTCGATTGTTGTATTTTAGCACTTGTTCCCACAACTTGTGTTAAGT
AGATTGTTAATAGATATGATGTACACTGTGACTATCCAGTTATTTATGAA
ATTTAGCTTCCATTTTACCCCTCTGGAGTCTAGCTCTTGGTATGAGATTC
TACATGTATGATGCTGTTACACTCCTTTTACTGGTTGCCAGTTTTGGCAT
CTTATACTATTTTCTTCTGTCCTCTACTCCAGTTTGTAATGAATATGGAA
TATGTCATGAATTTTATATTTTGTATGACATCATAATGACTTCCAGGTGA
CAATGCACAGGTGTATGCCTTTAATGCTCCTATAAAGTATAGTTCTATAA
AAAAATTTAAAATTTTTATTCAGAAAAAAGAAAATTTTTAGAAGAAGTTA
TAGAACTATGTCTAATAGGCGCATCAAACTGCGTGTCGAGCAGTGGGATA
AAATGTTAAGAAATGAGAGGGACAGAGAAAGTACATGTTAGTGATTTTTG
TACTATAAATTGGTGATTGAAGTCTGAATGTGGCAGTTATAAGTAATATG
TGAAAGTAGTGATTTTTATGTGAGAAGTTGATTAATAGTCATCGTTAATA
GCTACAATTAAAGGTGGTAGTCGGTTAGTGATCATAAGTGATGGTGATGA
CCGAATATCCATTTGTATATATGTATTTATTTAATTAATAAAACTGAATA
ATCACTAAAATATATTTGTTATAATCATTCGTTTCTAGTTTCTACTAAAA
TTTCTAACATAGTACTTTTGCTTGTGAAGTTTGTTCTGACTGAAGAGGAA
ATGCTTCTTGATCATGCAATTATTGAAGTGCAGAAACTTCTATCTGCTGA
AAGTAGCAGAGGGAAAGATGAAGAATACATAAACAGCTTAGTTTGTTACA
TTGAATGTGATGACTCTAAATCAGAAATGAGCTTGGTGCAAGCTATTTTA
TGGTCAATTACCTATTGGTGTGACAGCAAACTTCAAGATTATCATCTGCA
CTTCAGTGAGGTTGCTTCTCTTTCAGTGCTGTTTCTCAAACCCTACTTAG
TGTTCTCATTTTTTTGCCTGACTGTCTTTGTGTAGTTTACAAGAGTTTTC
TTTCAGCTATATATGTTTAGAAAAAACATAGACAACCATTGAAAGTGGCA
ATGGGCATTTTTCAATCAACGTAAGCATCGTATCAAGAGCCTCATTGATG
TAGCTGCTGCTACCTCAACACCATAGAGGAAAACTATACTCCCTCCATCT
CATATTATGTGTCCTCTTTCGACTATTAGTTGGTCAATTTGACCAAACTT
TGACCATTAGTTAAAGAATTTTTTTTAATTATTTTAAAAATCTGAAAAAT
GGATTTTGAAGGGGATTAGATATATTTTCTAATAAGAAGTTTTTTAATCT
TTTTAAGTTGGATAATATGTGTAATTTGCGGTCAAAGTTTAATCAATTTG
ACTCTTCAATAGTTAAAACAAGACATATAATATGAGATGGAGTAACATTT
AGTAACTTCGTAGTTTCCTAAATAGACAGAAGGATCTACTATTACACCTG
GTACTCAGAATCTCAGATGGCTTGCTGTACAGCCTACGCTTTATAAAAAA
TTTGGATATCTTTAGCTTCTAGCTACCATGCCGGTAATCTGGGTCAACTA
ATTTCTAGGTTTCCTCTAAAGTCAGTGTATAGACCGTGAGGAAGAAGCAT
TACAGATTAGATTTTTAGTGGAATGATTTCTTTTCCATTGGCATTCCCTG
AGTAACATTCATTCCTTCAAAATCTTCTGTAACTTTCTGAAAGTAGTTTG
TTGTGTTGTTCTTACTGCAAAGCTTTATTGTACGAGTACTTATTGTTTTT
TCTTATTCTGTTTAGGAACATGACTTCTTCGCAAAAGTTCTGACCCTGGC
GTCGGTACTTAGAAACAAAAATTATGGTGCTCAAGATGAAAACAAGGTAG
GACTTCTTGGTTGTGGGATAATCTTAATGGCAAATTTTTAGTGTCCAATC
TGTGACACCAGATCTTCTAGACGATTACTAGAATATTCACTCCTTAAATC
TAATTCTATAACACAGGCTTAAAGTTCTGGCAAGTTCTTATAAGCTAAGG
ACAGTGAACAATGAAAAGAAATTACCTAGTTAATTTGGTTTTTACTCGTG
CTAGTAATATTTAATCATCAATTTTTAATCTCTTGGTAGTTAATTGAAGT
GTTGTAGCTGTTTTATAATATGATTCCTTTACAAGATACATTATATATTT
CAGTTGACATCTGATGCTCTAAGTGGTCCTGACATTGTACATGTCAAAAT
GTATGTTGAGAGATCTGTTGAAGCTGCATATAGGCGGGTGAGTCATTGGC
AGTCACATGAATTTGTCTTATTTTAATAGATTCCTCATGAATGGTGATTA
CATATTTAAGATTCTACCATATGATCTCAGATAGAAGATAATATGAATCT
TGGATCTCAAATGGAGAGGGGTAATGCATTGGCTGTGCTTGCAAATGATG
TAAGAGTGATTGCTGAGAAAGAACTTAATCTGTATTCACCTGTCCTCTGT
GACTGGTATCCAGAATCAGCAATGGTTGCAGCTAAACTACTGCACCAACT
TTATGGTGAAAGACTGGTTGGTTTCCATGATCGACAGCAGCATTTTCTCC
AACTCTGTATTTGTGCATATTTACGATGTGCTAATTTATTATTATTTTCA
ATCTCTGCAGAAACCATTCCTTGAGCAAGTTTCCTCTCTTTCAGACGAAG
TTAAATTAGTGCTTCCAGCAGTGGGTAGTTTGGAGCATGGTCTGACTCTT
CTTTTTTCTTCTACATGTAAAGCAAACGAGTCACGGTCCTTTTCCAGCCT
AGAACTTGACCGATATCAGGTACTGCTTAATTGCTAACATGTATCTTCCC
GGTGGTGGTTTTTTGTTGCTTATCATGGCAACCTGTTGGTCCATTAACTC
TAACTTTGTCTTGTAAAAATGAACAGTAGATTTCTGGTCAATAGTTGAAT
TCAGTACATGCTGCAAAATTACTTGACTGCTACTACATACTTTTTGCTGT
CTCTGGATCACTTTAAGATTTAAATTTGTTAAACACGTCAGAAGTTCAAA
TTTACGTTGACTGGGGAGTTTTTAATTTTTACTAAAAACATATTCTGTTA
AACCATCAGTTCTGGATTGGTAGGAAACTTTTGATTATGAAGCATGTAGA
TTAACTATTATCTCACACTATCTGCAGGTTGGAAAGTTTTCTAGGCCTAT
TATTCTTGAGTGGGTAATTGCTCAGCATGCACGAATTTTAGAATGGACTG
GGCGCATTCTCGACCTCGAGGTTTATTTTACATTTGGTTATTAAAGTATG
CATTTGACTGCACTATGTAATGGCTTCTGAAACATTAGCAGTATAAATGT
TACTATGGTTTATAAGTTTATTAGTTGAATAGAACCTAACAAGTGCTACA
TGTTTAATGTGTGCTTATATTCTTATACGTACCTGTGCAAATACTCCTCC
TCACTCTAGTTCTCTCTGCTTACAGGATTGGGAACCACTGTCATATCAGC
AAAAACACTCATCTTCAGCAGTTGAAGTGTTTAGAATAATAGAGGAGGTG
CATGTCTTTGCTAATGAACTTTTTCTGTAGCAATACTGGATGTGTAAATA
TTGTAGAATCATATTGATTTCGCTTGGATGCACTTCCCAAGATAATTTTA
TTGTCTATACAGTCTCCATTAACAATCAGTCAGTATGCTTGTAATGACAA
TTCTGCTATCTTGATAAATAGTTTATCCTTTTTTATACTCTTACAGTGAC
CCTTACATCCTTCTTGGTTTGCAGACGGTGGATCAATTTTTTGGACTGAG
GCTTCCGTTAGATATTACACACCTACAAGCTCTACTTTCCATAATATTCC
ACACACTGGATAGCTATTTACATAAAGTTTGTAGCCACATAGGTATGTGT
TGGGTACCATTGTCCACATTTTGCTGCTTTTTTACTTGCTCTCCTTGAAT
CTTCACTAACCCATTGTCTTGTAGTCTGGATGCAAATATGCCTTCTGGTT
TCCTGTCATTTTATACACACTTTTCTGTAATGATTACTTTTCATTTTAAG
CTGATTGTTTTATTGCACAAATTTCTGGTACCTTCCATTATTTGTATGCT
CCCTGATAACCTTTCTTGAAAGCACTAGTAATGACTAATGATTAGTTTTT
TTTTAGCTTTTAAGTTTTGTGTATGTGATTGCCTGTTGGATTTGGATGTA
TGCAGTAAACTTATGAAATAATTAATGCAGTTGATAAGCACCATTTGTAT
CCTCCTGTGCCTCCATTGACCCGATACAAGGAGGCAGTATTCCCCATGAT
AAAAAAGAAGGTTGTTGAGAATGTACTTCTTGAAGAGGAAATTAATGGTA
ATTTGGTGGAATTGACAGTGTCTAAGCTCTGCATCAGATTGAACACCCTT
CAAGTGAGTATCACTAATTATCCTTACCCAATAATATCACTTTACTACGC
AGTATGCTTAGTTTCTGTCATATATACTCTTATTTTAACATTTTGAATGT
TCACTTCACATACTTTAGGCTATATCTGCTGTAGCTCCTTTTTTGTTCCA
CTTAAAAGAGAATTATACGAGTGATTTAAACTATTAAAAGATGATACCTC
ACTGGCACAAAATACAATGACAAAACCTTATACAATATGGACAAGGTTTA
TGCCAGTACAAAGCATGTCAAGAGTTGAGTGGGTACTTTTAAAGATGCAC
TAACCTGCTGACCTTGCATACCCCCTTTACCTCCACCAAAAACTTTTTTA
GAAACATTGAAAACAAAATATTCCTGTTAACGTTTCAAGTAACTGCATCC
TACACACTAGAGGCATTTGTGCTTTCTGCTATTATCAGTTTCAAATACAC
GACCATCAAGAGGTGATAAAAAAACAACAATTTGTCGGCATGATGGTATA
TGTCAAATATTCTAAGGAAGAATCTAATATTCTAATGTGATTTTATTGAT
TTCTGCAGTATATTCAGAAACAAATGGGTATACTAGAAGATGGAATTAGG
AAATCTTGGGGATCTGCGACGATATCTGACAACAGCAGAGGTTGTGATTC
AGTTTTTGTAACAGATTTTGGAGCCAAAAAGTTTATTCTTTTGACATATG
TTCAAAATTGCAAATAATGCTTATATTTCTGTTAAAACTGATAGAATCAG
CCTTTAATATGATTATTTGTCTTGCTAGTGAGAGTAAATATTAAGTTGAA
GTATTACTATTTTATTTTCTTTTTGAAATTTATAATTTTCTTTGATTTGA
ACCCATGACCTTTTTCGTGTGGGAGGATTGCCTTACCAGTAATGAATTAC
AACTAGGCTAGACTGCTACTGTTTTGCATTTTAGTAGTGATAAATTGATA
CTTTATTAGATGTGCTATCAATGTTTTTATATTATGGAGAATTTTATCTG
AAGTTAATGTTAAAGCAACATGCTTGATCTGATTGAGTTACGATAGAAAT
ATTTATGATTATTTGTTGTTGATTTAAACTTTACTTTTACTTTGATCATG
TCTCATTCATAAGGTTCCAACCCAAATATAGTAACTTCTGCTTAACAGTT
TCTGACTGTTCTATGTTTTTTTATCTAGGTGAAGAAAGTCGAGAGACTTC
AGAAACTGTATCTGAGTATAGTGAATCAGTTGATGAGCTTTTTGTTGCTA
CCTTTGACAGTCTGAGGGATACAGCAGCTGATGCAATCAAAAGAACATGT
GAATTCATAGGTAAGTCTGTAATATTAATCGTAACATAACTTCTTGGTGT
ATAATTAGTGGAAGTTTCAGTACTTCCCTTTAAAGTTTATACTCAAGGTA
GGAGCACCATGCAGATAAGACGCACTAAGTTTCTATAAAAGAAGTGATAT
TTATTCTGTAGCCAAGATTCCACCCAAAACATATCCCTAACCCGAATTGC
ATCGACTCACAATCGAAAGATAATCAATTTCTTGTAAAACATATTTTAAA
GTATTGGATGAGTGTTTGCTTAATTATGAACATTCCTTCTACTTTACTAG
GTTTGCAACCTTTAATTAATAAAGGAATACAAAGTCTGAGTTATTGGACT
TATCTGTAGAGTTAATTTTTTTCTAGTGACTTGATATGTACTTGTGTTTT
GTTAGGAAGTAAGTTTATAGTTCCACTTTAATTTTATCACTTGATGGTGT
TTACAAGCTTATGTCTCACATTACTTGTAGGAGCAAGAGTCGTGTTCTGG
GATATGAGAGACACATTTTTGTTTCGATTATATCGTGGTAGTGTTGGAAG
TGCTCGCTTCGATAACATACTTCCAAACTTTGATAGCGTAAGATACCAAG
TTTCTCTTCATGTCTCAACTCTCCCCTGTAACTATTTATAAGTAGTCTTT
GTGTATTAGAACCCATAGTGATTATTATATGTTGATACCTATACGCAGGT
TCTCAACAATATATGTGATTATGTTGATGACGTACTTAGAGATCTTGTGG
TGGCAAGCATTTGTAAGGCGTCACTGGTATGTTTTATCCTTGTGAGGCTA
GTCTTTCGAGGCCCCGACTCTGATGTACTAATATATTGCCCTGGTATAGG
ATGGCTTTGTTTGGGTACTTCTGGATGGTGGCCCTTCTTGTGCATTTTCT
GATGCAGATATCAATATGATGGAGGAGGACCTAAATATGTTAAAGGTATG
GGCTCTGTGTGTGCTTGCTAAATTATCATCATCATCAATTTTGAAATTAA
GCGGTTAGGTTCTTCTGCATCTAGTTGCCAATAAATCAGTGCTCACGGTA
GTTCCATGCTTCTTAAATAGGATTTTTTTATAGCTGATGGTGAAGGCCTT
CCCCGTTCACTAGTTGAGAACGAAGCACAATTTGCCCATCAAATTTTGAA
TTTGTACTCCCTTCAGGTTTGTCAAATCTCAAGTTTATCAATATTTTCTT
GTATTGTTTTAATTGTTGTGGTGGCTAATTTTGCTAAAGTTTTTTCAGTT
TCTAAACAAATTACCTGTAACTGTAATTATGTTCACACTGATCCTCTCTC
TTCTATATCAGACTGAATCTGTGATCCAGATGTTGATGACTGCAAGCGAA
CTTATTCCGACTGGAGTTGAATCACATAAGCATAGACATAGGCACTTGGT
AGATGCTCACACACTAGTACGGGTTTTATGCCACAAGAAAGATAAAGAAG
CATCCCAGTTCTTAAAATTGCACTACCAGCTGCCTGCATCATCAGGTGGT
TTTGATCTTCAAACATATTCTTTTCATTTTGTTGAAAACTTGCATGAGTC
ATTTATACCTGCACGTGCAAGTTTATTACGGTATACCACTGTGACAAATC
TTCTTAGTAGATACATGATGGTTCTAGCAGTTCACTCGGGTAATCTATAA
AAGATGTAACTTTATTACAGTAGTATAATACTGCCGGCTGATCTAAGTGT
TCATGTGCAGATTATGAAGATGAGAGCCCATTGAAGGAACCTGGTCTGAA
ACCACCCATGATGGCAGATCTTCTAAGAAACACCTCAATGCAGTGGTCAA
ATAATGGCCATGACAGCTTTAAATCAATTAAGAAGAAATTCCAAAAGGTA
ACATCAGAGATCCGGCACTCAGGATCATTGTCTTACTCTTAA
Sequence Length:
12942
Sequence Checksum:
780063db6b3bc0e46556cf73749e3791
View location in JBrowse:
Cds:
>DCAR_004665cds ATGGAAACGACGCCGTCCTTACTCCAACGCTACCGCCGAGATCGCCGGAA GCTCATCAAATTCTTACTCTCTCCCGCCGCTGGCTTCGTCAAAGAGCTTC GCAACTCCTCGAATTCTATCTCTAGCGTTGATTATGATACTCTCAGCGCC GATTATATTCTCCACTGCATCCAATCCAATGGAATTCTTGATATATCCGA GGCAACAAGGAAGTTCACAGAAGAAGCTCAGTATCCCATCACGATGGATT CTGAGTTAGGGGATACCTATTTCCTTGTTTCAGATCCAGAGTCAGCTGGA TCTCCTCCTCACCGTGCTCCTCCTCCGATTGTTGTAAATCATTCCAGCAG TAATGACTTGCATCCATCTGATCTACATGACAGTTTGATAGCTCAAAAAA TATCTGTCCCCAGTCATGAATCTAAGGACAAATATGCAGCTAATAAGCAA AAATGGAAGCCAGTAAATAGGGTTCTTTCTTTAGGATTACCTGCGCTGCA TACAGGATTATCGGATGATGATTTGCGGGAATCAGCTTATGAAATACTGT TGACGTGTATGGCATTTTATGGGCTTGAAATATATATTTTTGAGGATCAA AAGAAAGATAAAAGTTCAGGGTTTCTTGCTGGGTTGAAGAATAAAAAGGA CAAAAAACATCCTCGGTCTCAGTCCCAATCTCCTGAAAGACATGATGAAG TCATTAACACCATTCGTGTTCAGATGCAGATTTCAGAAGCAATGGATGCT TGTGTTAGGCAAACATCAATGCAGTTTGCTTCAAGAAAAGCATGTGGACA ACTTGATATTCCTCAGATTTCACTGGGGCTTCTGAATGGCATATTTAAGT CCGACTTTCTTTATGAAAAACCTTATATGCAATGGAAGAAACGACAAGCA AATATTCTTGAAGAAGTCTTTATTTCTGCTAATCATCTAATAACTGATAA GCAAGTAATTGACACATTACTTGCAAAGATGAACAACTCTGAGGAATGGG ACAACCTAATGTCGACCTCTGAACGTACTGAGGTCCTGGCAGCTATCCGC CAGGTGTCTTTGCTATTGTCCTCTGTTAATGGTCATTTTGGTATTCAAGG TGAAACATGCTATTGGGCTACCAGTTATCACTTTAACATCAGACTTTATG AGAAGTTGCTTTTTGGCATATTTGACATTCTAGATGAAGGCAATTTTATA GAGGAAGCTGATGAATTTTTGAAGCTTTGCAAGTTGACGTGGTCTACTTT AGGAATTACGCAGAAAATGCATAATGCACTATATGGTTGGGTGCTGTTTC AACAGTTTGTTCTGACTGAAGAGGAAATGCTTCTTGATCATGCAATTATT GAAGTGCAGAAACTTCTATCTGCTGAAAGTAGCAGAGGGAAAGATGAAGA ATACATAAACAGCTTAGTTTGTTACATTGAATGTGATGACTCTAAATCAG AAATGAGCTTGGTGCAAGCTATTTTATGGTCAATTACCTATTGGTGTGAC AGCAAACTTCAAGATTATCATCTGCACTTCAGTGAGGAACATGACTTCTT CGCAAAAGTTCTGACCCTGGCGTCGGTACTTAGAAACAAAAATTATGGTG CTCAAGATGAAAACAAGTTGACATCTGATGCTCTAAGTGGTCCTGACATT GTACATGTCAAAATGTATGTTGAGAGATCTGTTGAAGCTGCATATAGGCG GATAGAAGATAATATGAATCTTGGATCTCAAATGGAGAGGGGTAATGCAT TGGCTGTGCTTGCAAATGATGTAAGAGTGATTGCTGAGAAAGAACTTAAT CTGTATTCACCTGTCCTCTGTGACTGGTATCCAGAATCAGCAATGGTTGC AGCTAAACTACTGCACCAACTTTATGGTGAAAGACTGGTTGGAAAGTTTT CTAGGCCTATTATTCTTGAGTGGGTAATTGCTCAGCATGCACGAATTTTA GAATGGACTGGGCGCATTCTCGACCTCGAGGATTGGGAACCACTGTCATA TCAGCAAAAACACTCATCTTCAGCAGTTGAAGTGTTTAGAATAATAGAGG AGACGGTGGATCAATTTTTTGGACTGAGGCTTCCGTTAGATATTACACAC CTACAAGCTCTACTTTCCATAATATTCCACACACTGGATAGCTATTTACA TAAAGTTTGTAGCCACATAGTTGATAAGCACCATTTGTATCCTCCTGTGC CTCCATTGACCCGATACAAGGAGGCAGTATTCCCCATGATAAAAAAGAAG GTTGTTGAGAATGTACTTCTTGAAGAGGAAATTAATGGTAATTTGGTGGA ATTGACAGTGTCTAAGCTCTGCATCAGATTGAACACCCTTCAATATATTC AGAAACAAATGGGTATACTAGAAGATGGAATTAGGAAATCTTGGGGATCT GCGACGATATCTGACAACAGCAGAGGTGAAGAAAGTCGAGAGACTTCAGA AACTGTATCTGAGTATAGTGAATCAGTTGATGAGCTTTTTGTTGCTACCT TTGACAGTCTGAGGGATACAGCAGCTGATGCAATCAAAAGAACATGTGAA TTCATAGATATCAATATGATGGAGGAGGACCTAAATATGTTAAAGGATTT TTTTATAGCTGATGGTGAAGGCCTTCCCCGTTCACTAGTTGAGAACGAAG CACAATTTGCCCATCAAATTTTGAATTTGTACTCCCTTCAGACTGAATCT GTGATCCAGATGTTGATGACTGCAAGCGAACTTATTCCGACTGGAGTTGA ATCACATAAGCATAGACATAGGCACTTGGTAGATGCTCACACACTAGTAC GGGTTTTATGCCACAAGAAAGATAAAGAAGCATCCCAGTTCTTAAAATTG CACTACCAGCTGCCTGCATCATCAGGTGGTTTTGATCTTCAAACATATTC TTTTCATTTTGTTGAAAACTTGCATGAGTCATTTATACCTGCACGTGCAA GTTTATTACGGTATACCACTGTGACAAATCTTCTTAGTAGATACATGATG GTTCTAGCAGTTCACTCGGATTATGAAGATGAGAGCCCATTGAAGGAACC TGGTCTGAAACCACCCATGATGGCAGATCTTCTAAGAAACACCTCAATGC AGTGGTCAAATAATGGCCATGACAGCTTTAAATCAATTAAGAAGAAATTC CAAAAGGTAACATCAGAGATCCGGCACTCAGGATCATTGTCTTACTCTTA A
Pep:
>DCAR_004665pep METTPSLLQRYRRDRRKLIKFLLSPAAGFVKELRNSSNSISSVDYDTLSA DYILHCIQSNGILDISEATRKFTEEAQYPITMDSELGDTYFLVSDPESAG SPPHRAPPPIVVNHSSSNDLHPSDLHDSLIAQKISVPSHESKDKYAANKQ KWKPVNRVLSLGLPALHTGLSDDDLRESAYEILLTCMAFYGLEIYIFEDQ KKDKSSGFLAGLKNKKDKKHPRSQSQSPERHDEVINTIRVQMQISEAMDA CVRQTSMQFASRKACGQLDIPQISLGLLNGIFKSDFLYEKPYMQWKKRQA NILEEVFISANHLITDKQVIDTLLAKMNNSEEWDNLMSTSERTEVLAAIR QVSLLLSSVNGHFGIQGETCYWATSYHFNIRLYEKLLFGIFDILDEGNFI EEADEFLKLCKLTWSTLGITQKMHNALYGWVLFQQFVLTEEEMLLDHAII EVQKLLSAESSRGKDEEYINSLVCYIECDDSKSEMSLVQAILWSITYWCD SKLQDYHLHFSEEHDFFAKVLTLASVLRNKNYGAQDENKLTSDALSGPDI VHVKMYVERSVEAAYRRIEDNMNLGSQMERGNALAVLANDVRVIAEKELN LYSPVLCDWYPESAMVAAKLLHQLYGERLVGKFSRPIILEWVIAQHARIL EWTGRILDLEDWEPLSYQQKHSSSAVEVFRIIEETVDQFFGLRLPLDITH LQALLSIIFHTLDSYLHKVCSHIVDKHHLYPPVPPLTRYKEAVFPMIKKK VVENVLLEEEINGNLVELTVSKLCIRLNTLQYIQKQMGILEDGIRKSWGS ATISDNSRGEESRETSETVSEYSESVDELFVATFDSLRDTAADAIKRTCE FIDINMMEEDLNMLKDFFIADGEGLPRSLVENEAQFAHQILNLYSLQTES VIQMLMTASELIPTGVESHKHRHRHLVDAHTLVRVLCHKKDKEASQFLKL HYQLPASSGGFDLQTYSFHFVENLHESFIPARASLLRYTTVTNLLSRYMM VLAVHSDYEDESPLKEPGLKPPMMADLLRNTSMQWSNNGHDSFKSIKKKF QKVTSEIRHSGSLSYS*