Resource Type:
Gene
Organism:
Name:
DCAR_001477
Identifier:
DCAR_001477.gene
Locus Tag:
DCAR_001477
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_001477, is a part of gene, DCAR_001477. |
| The genetic_marker, MK007390 TP157787, is located in gene, DCAR_001477. |
| The genetic_marker, MK010655 1_15822500, is located in gene, DCAR_001477. |
| The genetic_marker, MK010656 1_15823389, is located in gene, DCAR_001477. |
| The genetic_marker, MK007389 TP10076, is located in gene, DCAR_001477. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_001477 | DCAR_001477.mRNA | mRNA | DCARv2_Chr1:15821596..15834026 |
Sequence:
ATGGAGGAGGATGAACAAATAGCAACAGATAATGTAACAAACAGCACCAG
CACCAACACCAACCAAACAACTTTGTATTCTCCTCTACAACTAGAGGCAG
AAGACGAGTACGGAGATGATGACGGAAACGACGATGTCGGAGATGAAGAA
GAAGAGGAAGAAGAAGACGATATGAGTTATAAGATGAGATTCGAAGGCGA
GATGGATCCATTGGATTTCATTGAGAATGATGCCTCGGCCGTTGACAAGT
ATCATCAATTTCAGCGTATCGAGAATGAATATGAAGCTCTCGCTGCTCGA
AAGCGTAAATCTCTCTCCACTCCTCTCTCTTCTAGGTATAAGTTCCTCTC
TTATAACAATTGTTTGCTTGTCACAACTGTTCTTATCTGAGCGTATGATA
TCTTAATTGTTTAGTATTTAGATGAATGTATATATAAATTATTATATAGA
GGAAGAAATCAGTTTTTTTTTTGAATCTACATATTCAGAGCACACAAAAG
CAACTTGCATAATGGACTAGATATCGTACTTGTTAGTTTTGATTTATTTA
TTTCCTACTTTCGATTAGTAAGATTGTTATTAGAGTAGTAAAATAGTTGA
TTTGCTGAAAAAAGGAAGCTCAAGTCATTGTTAAATTGGAAGACTGTTGT
ATGATGAGGGAATATAAGAAACTTAATTAGATTCTTATTAACATATGATG
AGCATACCAAGGTTAATTATTCAGAAATTGGGTATTGCTGTTTAGTGATG
TAATGGAAGTCCAGTCGTTATATATTGCTTACAGAAATCATATGTACTTG
ACAAAATAGCTTTAAGATGATATTTTGATGAGGGACTATAAGACGCTGAA
CTGGTGGAGATAGACATGATAATAGTGTTAAGAGGCCTTGTTTGTTGGAA
TTTGGATTATAATTACACATTTTTTCTAGCAGAGTAACTATGAGTAATGG
AGTATTATTATCGTAATATAATGGAAATTACTATTTTCATGTTATTTTAA
AGTTGTTATTAATAATTATCTGACGATAAAGTTTATTATATGGTTTTCAT
TTAGTCCCTTCCTGTGTGGTGTTTTTGATCATAACTGAGAAAAAAAATTA
TGTTCTTGAGCTAGAGATCAGACCAATGTAGAGATTTAATCTTTAGCAGA
TATATCTGTTGTCTCCGATTGTAGAAGTTCTCTTTGCAGCAAGCTTTTAT
TATAGGATAAACCTCTGAATATTAGTTGTAACTTGTAACTGACCTCTTTT
AATATGCTATCATTATGGTGGAAAAATTGTAGAAAGAATCGGGGTTTTTA
TACATATATCTTGTGGCAGCAATCCATCAAAAAAGCTTAGAAATGATGAC
GATCATGTAGAAACGTTTGAAGAAATAATGGAAGCAATGGCTTATAATTC
AGGACGAAAACGGAGAAGGAAGGTATGTCACATGACAACCCTGTTTATTA
ATTGATTCGATGAAGCTAACTATTGGCTTGGTGCCTCCAAACCCAATAAC
TCTGAAAGAGTGGCATGAATTGTTTTCCTTAGGAATTTTTTTATTCATTT
TGTACTATTTGTGTTTATATTTAGTGTCTATTGTCTAGTCTTGTACACGG
ACTTTGAGGTTATCTCTATCGGGAAAATTAGAAAAGAACTTTGGGATTGT
AGGAACCGGAAAACATGCTGTGTTTAATTATTTCTATTATGAGACTGCTC
AGAGATCCATCTCCTGTCATAAGTTTCTCCATTGAGCTCTAAATCGCATC
TGCTTTAAGACATGAAGCTAGGAAATTTTAATCATGGTTCTCCTCAGTAC
TTCTGTTGTAGCCTTTCTCTGTTGTCTAGAAATTGACTTAGGAAAAACAA
TTATTCCTCGGTAGTTTGTGTAGATAGCTTGTAAGTTATAAGAGTTTAGC
TGAAGGTTTTGCTTACACAGTGTCTCTCACTTATCTGCTACAACTGGTGT
CAGTATGCAGTATGTCAGTATTGATTTACTAATGCTTCATTTTAAGTAAT
TGTATGCGGCATGATAATGCTACTAGCAACTTTTGTAATTCGTAGTTGTC
TGCAGATTACTTTTTATTATAGCTCCCAGTGATGGAAGTACTATTTGAAC
AACTTTGTACGTTCATATTTTTGCTTTGCTCTGTACCTTCGACCATCAAT
AGATACTTCTATAATCTTTTTCTTACGCTTAAGGTTTATCTTCAATTTTC
TGCAATACAGCAGCCTGCTTACAGTTTCTCAGGAGTCTTAATGAACAATA
TAATTCTTTTTGCTCTGATTAATATTCTGCAGAACAAGAAGAAAGGTAGG
AGAAGGGGATCAAAGAAAAAAGTTAATCCAGTAGTGGCACGAAAGCTTGG
TGAAGCTACACTTCATTATTCGAATGAACGTTATGAAGAAGTATGTGGGC
TAAATTGTCTAAATTGATTTTTTGGTTCCTGTATTAATTGCACCTAGACT
TTATGTTTTGATTTTAATATGGGTGTGTAACTGGTGATATAGGGCATATG
TATCCTTGTCCTAAGCTCCGGGCTTTATCAACTATCAAAATAATGTAATT
GATCCTTCATAGGTCACTTCCAAAGTACTAGTGTTATATATTATATATAT
GTTCTCGTATCATATGAAACAAACTTTTAGTTTGTTTTTCTTTCTTTATC
TAATTCGGTTCTTCTAAGCTGCAGCATTTTTATTTTTGTTGAAAATTCAC
TTAATTGTCTAATATATGCATTTTCGTCTCAACTCATCCCGTGTATATTG
TGGTTTGTTTGAATGGGGAGACAAGTTTTTGTTCCTTTTAATGTGTCCAA
CTTTAAAATTTTCGTTATAATTAGGTCTTACTTATGTATGTTTACTCTTA
TATGCCACTTCTATATATTTGTATCGTCAGTTTCATAAATGCTAAATGAT
GAAATGATATGTTACAGTAGGTCATTAGAATTGCTTAGGTTTTGATAATA
TTATCTTGCTGACTTGTATCCTTTTTTCTTAATTTCTCAATTAGATTGTT
ATTCAACTTGTATGATGTAGGCCAGATGTCTTTTAAAAGAAGTTATTCGG
CTTGATCCTTATCTGCCTGACCCTTATTACAAGCTTGGCCTCGTCTATGA
GCAACTTAAAGATAAAAAGAAGCAAATGGGTTGCTACATGCTTGCTGCCC
ATTCGTCACCAAAGGATGGATCTCTCTGGAAACTTCTTGTTCTATTGTCT
GTGTAAGTTTAGCCAAAGCCTTTGACAGTTTGACTGATTATCCTATTTGA
AATCTAGTTCCATATCAATTATTTTTCTTTATCTCATCTTATTGCCTATA
TTAGCATTTAAAAAACAAGTGATTATAAGAACATAATTTTTTTTGGGCAA
ATGTGATCAGTAGTTAATTTTCTAGAAAAGCGTAAACGAAGTAAAGTTTA
CTGGGATAGAGTTAATGAGTAAAAATATTGATCAGGAAAATTTGACCATG
TCTTAATCATTGAGATTCGTGAATAATGAAGTATCTTTTTTTTTTTTTTT
TTAAACTTTGAAGTCTTTAATGACTATACTGCAGAATTGCACGACCATGT
GTAACATTCGGATTTATACTTTCGAACTGTTTAGGATTGATTGGTCTTAA
TATGACGATTGTGATGCTTTTACAGAGAGTCTCCGAGATAATTTGGTTAA
TATTTTAAGAAGCAAGTGGTGGTTGTCAGTTTGATGTTGCTATTAGTGAC
TATTACAGTCAGTCAAGATAACATTTGTGTATCTAGTAAATTGTTGTAGT
GTGTTAATTTTTTCGCTCCTATTAATAGCTAACAAACTGGAATATATGCA
GAGAAGAAGGTAATAATGAACAGGCTATGTATTGCCTTTCCAAAGCTATT
ACAGCCGATCCTCAAGATCTCAGCCTTAGGTTTGACCGTGCTTCACTTTA
TGTTGAGCTGGGTGATTATCTAAAGGCTGCTGAATCGTATGAGCAAATTT
CGCGGCTCCGTCCTGAACTTGTTGAAGCGGAGCTCCGCCCTGAACTTGTT
GAAGCACTGAAAAAGGCCACAAAGGTCAACTTCGCCTCTTTTCTTATAAT
CTCCATTTAAGCATTATAAGTTTGCATCATTTGAGTATTTTGTTATGGTT
CTATATTAAAGCGCATTTTAGAGAACCTCACTCAGTCTTACTTAATGAAT
GCTCATTCAACAAATATGTTTTAGGTATTTTTGTTCTAATGACTTTTATA
TATTTATGCAACTTAAAGGCTACAGAACAGTACATTTTCCCCATTATTAG
TATGTTCGTTTTTCCTTCCAGTCACTGCATGCTTGCTTATTTTCTTTCAT
CTTTGGCATCTTTATTTCAGATTTTGTTGTTGATTTAGAGTCTAAAATAA
TTGTTAGAAAGGGTTTTTCATTTTTTGGTGTTGTCAGATATATTTGTTTG
TTAATATTATTTGTCTGTGTATGGCCTTCAGTTTTGCTTGAAGCTAACTA
CTACCATTCTCTTTCAGTTATATCAAAAATGCGGTCAGCGTGAACGTGCT
GTTAGTATTCTGGAGGAGTACGTTAAACGTAATCAAACTGAAGCTGAAAT
CAGCATTATTTATCTTCTAGTATCAATGCTCATCGAAGGCAGAGCATATA
TCAAGGCTCTGAATCATATTGAGCATGCACAACAGGTGTATTGTGCCGGC
AAAGAATTTCCATTACCTTTAACTATTAAAGCAGGAGTGTGTCAGGCTCA
CCTCGGAAATCTTGAAAAAGCAGAGGTTTGTTACTTTACATATATATATA
TATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGA
GAGAGAGAGAGAGAGACACACACACACACAGTTGCAGGTTAAAGAAAAAA
TTAATTTACTTTAATGTAAGCATGTTAAATTGAAGTTGTGGCGGTGAAGG
TGTAAGGTTTTTGTATATTGAAAGAACTTAGCTTTTGAGTCTTGAGTTTT
TTCTGTTCCTTACTTCAATCTTTTGAAGAATGTGATAATAGCTCTCTACT
TATACTTGACAAGGATGTCTAGGCTATTTTTTGTGTCTTGCAAAGGGGCA
ATGCATGTGATCGTCCACAAATAGTCACTGAAGTTGCTGATTCATTGGCA
AATCTTAAACACTATGAACTTGCATTGAAGTACTATATGATGTTAGAAGC
AATTGGCGACAATGACAGCGTAAGAATGATAAAATCCCCTCTCATTGTAT
TTGCATTATATCAAATGATTGTAATTACTAAAAATTTTCATTCTGCATGC
TTTAGTTGCCAACTGACTATAATTTTTAGTTAGTCTACTATGTCTTGGAA
TTGATTAAGGATCGGATGAGAACAATTATTATGGCTGAGTGTTCAAGTTC
TTACATGTATATTAGTTAGAATTTTTGTTATAAATATGTATTTTAAATAG
CAATGACACATTTATGACATTATGAAGTTGAGTTGAACTATGATGAAACT
AAATCATTGTTATATGGTGTTAACATGGCAACGATATGCCCTGGCACTAT
AAATACAAAATGATATTCTTTTGCCCATGTCCTTTTACCCTTGCCAACAT
CTGATTATTCTTGCCTTCACATCTGTTTTGTTATTGCCTGTATATCTGTT
ATATTCCTTGTCTGTCTTAAATCCTGCAGTGATAATGTTTTAGCATTTTG
TAACTGGCTTTTATCTAACATCAAGTTTCCAACCCCCCAAGATGTTGAAA
TCCTATGTTCACTTTAAATGTACTGGCAAGTTCATGAGCTTTTCTCGTGA
TGTACTTATTGTGTTATGGTTAACTTGAAAATTTTAGTTCAATCAAGTCT
CACTTAATAATTATTTTGCAGGGTGTTCTATATTCAAGGATAGCAGAATG
TAACTTACATCTAGGCGATCGACTACGATCAATTGAGTACTACTATAAAG
GTATCATGCATGGGTGGTATCCTATTCAATTGGCCTCATTTGACGTAACA
TGTTTAAGACCCTGCACGATTATTCTCTCTATGCAATTTAATGGTCTGCC
ATCGCTAATAAAAATGAAATCACATACAACACCAGAACACCTTGACACAA
AGTAACCGCGATTATTAATCTACAAATACCTGTAGCATTTTTTTGTCAAT
CACCAAGAAAGCAGCGACAATAGGGGGTTACCAAAGGGCTCCTGCTCTTG
TTGTACTGTCCTCACATCTAGAAGGTTTGAGGGTTCAAGTCTTCTCAGAT
GTAAAGAGGGTCAATTGACTAAAAACCAGCAAGGTATGCAAGCAATTTTA
AAATCAGCTCTGATGTAGGAAAGTGAAATTGATTGGTGAAAGGATAATTC
TCTCTCCCAACATGGGTGTATATGTACTGTTGTAAATTGGCAATGAAGAG
CATGATTTAGGTTGTAATCAAGCCACACAATTGGGCTTGTAACATAATAA
CATTATCTGCGTTCTATTTAGATTTTGCTGTCTTTTGGTAAGATTCTGCC
ATAGAATATTTATATAAAAATGCATGTAGACAATTTACAACTTTTGTGGT
GCTAAAATCTGGCGTTAAGATATTAATTGTTTCTAGTTTGTTTCATTTTT
AGCTCTGCCTAAACTCAATGACAGTGTTGATACACGGCTAAAGCTAGCAT
CGCTTCTTCTGGAGGAAAGCAAAGACGACGAAGCCATAAGTATACTTTGT
CCTCCTACTGATCATGGTATGCTTTATTACAGTATTCGTGGCTCTCGTAA
TCTGCCTATATTGTTAATGACATTTTGCTTATGAGCTTCAGAGTGTACAT
ATGAACACAACTTGGACAAACCCGAACTATGGTGGACAAATTTCACTATA
AAGCTAAAGCTTTCCCAGATCTACAAAGATAGAGGATCCTTGGACTCCTT
TGTCGATACAATATATCCCTGTGTTCGGAAGTCATTTCTTGAGGCTATTC
AACAAAAGGTAATACAAGAAAACATAATTATATCGAACATTATCTAAGTT
GTGTTAGCTCAGTGGAAGCTGTTTTTTGAGATAGTGGAGTCAAAGCAGCA
TTTTGCTTTGGGCATCAATATATCTCACTAATTTTAGGAAGTATACATTA
AGAGATACAGGCTATTAAGATTCTTGACTAAAGTTGCCCCCTGTGTGCGA
AATGAAATGAGGGACTTCTTGAACTATACACTTTATGAGGAAAATGATGA
GAAGTTATTGAAAAAAAAAAAAGAATTGTCAGCAACTTGAAACTCACTTG
ATGAGGAAAAATGATGAAAATCTTGGCAAAAAAAAGAACTGTCAGCAACT
TAAAATTTTCAGAAATTTGTATTTCTTCTTAATAAACTATATAATTTTTC
TTAGGCCCAGTTTAACTTTGAAATTAGTGGGAATCCTGGTTTGAACTGTA
TATGTGATCTCTGAATCATTTGGAATCCTTATTTTGAACTGCAACTTGTA
CTTTTTTTTATAACAGCTCAATTCTACACTCATGAACTTTTACAATATAT
GAAGCCAGCCTGCAGCTAAAATATTGTTTATCCGTCAATTACCATGACGT
CATCAAACAGAATGATATATATACTCAATTTAGTGGTTTAAATGATATGT
TTTTTTAATGGGTGGTCTAGATGAGATTTTTGGACAGAATGAGTGGCCCG
TTTGATATAAAACCTCTTCCTGAATGGCTAAACCTTAGTTTATTAGCAAG
ATTAGTATACCTTAGTTGCACATAATGTGCAGTAGAGCTTTTGAAGATGT
TTTGCTGAATCAGATGATCATCTATAGATCTAAGTTAATTAACACGAATG
ATATGTTTTTTGGAAGTATATTTAGTAAAACACAGCATGAAATTATATCT
TGGCGTTTAAGAACAGTTACATAAGGAGATTTAGAGGAATTTTCCCTGTA
ATACTTTTATTAATTTTACTGTTAAAGCGTTTACTATATTGCTGCTTTCA
TTCATGGACAATTATGCATCTTTTATAGGATAGAGCAAAGAGAAAGTTAA
CAAGAAGTGAATTGTTTGAAAGAGCCAAAGTGCTAGACAATCGTCAAAAC
GATAATGTATTCCATGGCTTTAGACCTATGGCGTCAACGTCGGATTTGTA
AGAATTCCACTAATTCTTATTCTTTTCCATGATATTTATCATTACTAATT
TTACTTGTGTAGTTGAAGCTTTTATAGAAATCACAGATTTTTGAAGTTGA
TATATCAACCTTCATCTCTACTCGATTTTTTCAAGTAATATATGTGATTT
GTAAATGTGAACGGCTTACGTTTAGTTTTCTTAAACTTATGTATTATGCT
TATTATGACAATACAACTTTTGGGTTGCTTTCAATTATTTTCATACCATG
CAGTGAACTCGAATCTACTTGATATGTTGTTTGATACAAATTTCAAGAGA
TACCTTTAAAAGCTGCGGTAAGAGTTCTTAAATCGTGCAGCATCTAATGG
AATATGAGCTCCTTATATGAGTCTTCTGACAATGTTTAAATTTCTTTTTA
ATGAAAATCCGTAGTATATTTTGAATCTGGTAATCTATGACATGTAGGTA
ATTTTTGATTTGCGATTTATTGTGTATAATATTTGCCCATAACATATGGA
TATGGAGATGTAGTAGATACCTGCACCCAAGTCCATAACATAGATGTAGG
ATGTAAGAAGCTTTATTTTGTATAATTTTTTCCAAAAAAAGCTGCATGTC
TAATCTTTGTTACTTTTTTTCATATATTAACATACTACGCCACTGTCCAG
AATTCGATCTGGTTTTATTTCTGCATTTTACCCACATTCTCCCGGAGCAA
GTGCTAACTAATACCTCTATGTGGCAATACTTTAGAACAAAAGCTACCAG
AGCAAAGAAGTTGCTTCAAAAGAAAGAAGCATTAAGGGAAGAAAAAAGAG
CTGCTGCATTGGCTGCAGGAGTTGAATATAAAAGCGATGAATCAGATGTT
GAACCTCCTGTAAGAATTTTTAATTGTTATACTTGTGGCTGGATACTCAA
GCTCCTGAATATAGTGGTAGAATTTCTTCTTGTCCATATAGTATAGCTAC
ATTTTGTGATTTTTGAGTGCTATATTTGATGCAGCAAGTCACAAGGAGAC
GTCCTCTGCCGAATCTCCTGGTAGACGAGGAATATCATTGCCTCATAATA
GATGTTAGTGTTGCATCCTTCCTTTTTCCATTTTTCTCATTTTTGCATTT
GTTAATTATCATTTTATGTACTTGCCATCATTTGCTGCTTTGTTTATCAT
ATATGCTTTCATTAACTTGCCTAGTGATTCTTTTCTGAAGCTGCTGCTTC
TCCTTTTTAACCCAGAGACTTGCTAGTAGCATTTTCTTACCAGTCTTTGG
TTTTGTCTTATTCTTCATAGTTATGCAAGTCACTTGCATCTCTTCAAAAA
TACTGGGAAGCACTTGAAATCATTGATATTAGTCTGAAATTGGCATGTAG
CACTCTCTCTGTAGAGAGGAAGGAGGAGCTTCGGTCCATTGGAGCTCGTA
AGTTCGGTTGTGTGAAATTTATATATGTTCTTTCTCCTTGTCACCCTCAT
TTTAGTATTATTACATTTAACAAATACATTTTACCTCATTTATGTAATAA
TAAAGTGAGGTGGAACACTTTGTTAACTACATTAAAGCATTTTCTCAATG
TTGGTGTAGAAATAGCCTATAATATCGGTGATCCTTCGCATGGATGGGAT
TGTGCACGATACATAGTCAATCAGCATCCATACAGCTTCGCTGCATGGAA
CTGTTACTACAAAGTAATTTCGAGGTAAAAAGAGTTAAATTCTAGTTATG
TAAAGCAAGTTTATTTTTGTTGCCCTGGTCTGTGATGCCCTGGTCTGGGG
GTGATCAAGGGTTGTATTCTGTATCTTACCTCTACCTACTTAACTTTTAT
ATTGCACTTGGTAGCTTTTTTAAAAACGACTCGTTTGTTAGTTATTCGCC
AATTGAAACAGTGGAATGCAACTACTGCTGACCGTAATCTCGTGATGATA
CCACTAAGTGGGGATGTACAGGGTTTGGATACAGACCAAACCAAATCAAG
CCTGATTCGTTTTGTTTTTGTACAGTTCAACTGAAAAGAAACCCCGATAT
TAAGTTGGGGTAATAATTGCCCAACCTATATAGGTTGGGTTGGTTAAGGG
TCCCAAACCAACTTACAATTAGTAGAGTTGGGTTATACAATTTTTAAAAA
TGAATGGGTTGATATTCTCTAGGCTGAATTAATTGGTTTGGGTTGGAAAA
TTGTCTCTAACCCGACCGCCGTACAACCTATACCATTAATGGTAAGGAGT
GTTGAGCACATGACCTCTACAGGAGCAGAGGTAAGGGGTATTGGTGGATC
AACCGGTACATCCACTTTATATTAAATCTTGGTTTCCACTAGTGTACGTT
CTAAATGTCAGTTCTAAGTTTTATTCTTCTAGTATGATATGCTCAAATGT
TATGATGAGTCGCACATGCCTAAGCTGAGAGACGTTAATGTGGTCTTTGA
CACCACTTTAATATTACGGAGAAATATTTTATTATATTGGCAGTTCAGCT
ACATAGTAGGTTTATAAAGGAATTCATATTATTTGACATTATGCTATAGT
GATGCGTTTGTATACTAGAAGGTATGTATTGGCACCCCTGCAGCTGGAGA
TTCTTATAGCTATCTGTTTTATAATAGGCTGGATAATAGGTATTCGAAGC
ACGGCAAGTTCCTTCATTCTATGCGAGTAAAACACAAAGATTGCGTACCT
CCGTATATTATATTCGGCCATCAGCTTACTATGATCAGTCAGCATCAGGC
AGCTGCAAAAGATTATTTAGAAGCTTATAAACTGATGCCAGACAATCCCT
TGATCAATTTATGTGTAGGTATGATTCTTTTGCACGGGATCTTTGCAACA
TGTTGCTTTATTCGATTAACACTCATAGAGCAAAAGTAAGAGAGAACTTT
GTTATACTGTGTTTCACAGGTTCTGCCTTAATTAACTTAGCCCTTGGTCA
TAGACTCCAGAACAAACATCAATGTGTCATGCAAGGCTTGGCATTCCTCT
TTAAGAATTTGCTACTTTCTGAAAACAGCCAGGTATGCTTTGTGATGCTC
ATCTGAATGCAACTTTTCACTTCTTTGTACGGCAGGTGGACTATTTCGGC
ATTCTTTTGCTAAGAATTCATTACTATTAGAACATTTTTAAGTGTCACAG
GTCATCTTTGGTTGCTCCTATATGTGATTGTTTCATGTCATTGAGTTGCA
AAATACAAGCTTCTGAGTTATAATACTGTATGATGCATTCAATATATATC
TTTATCTTTTACTAAAATGAACTTAATTGAAAGCAATAGATACGAATTCA
AGGCTAGGCCATGTGTCCAAGCAGTTATATAGAACAAAGGCAACATAAGG
TGGGATCAAGTATGGCCTCAAAAATACCTTTGCAACATTTCCCGATCGTA
GTTGATTCCATGTCTCCGAACTTCTTTCCCATGGGGATATCTGTCTAGTA
TTATATTGCTCGCTCTTGTTTAAATATTGCTGCCTGCATACTCAGATATC
TTGGAAATTTTCGTTTTCATCTATCTACTAGATTGGAACGAAGACTTGAA
TGTGTGGTTAGTATTGCGAAGTTCTGATATTTCCCATCCTCTCTTGCAGG
AAGCATTATACAACATAGCTCGTGCATATCACCACGTGGGTCTTGTTACC
CTTGCTGCTACATTTTATGAGAAGGTGCTTGCAATACGTGAAAAAGACTA
CCCAATACCTAAGCTACCTAATGAGAATCAAGATGGTGTCGAGAGTCGGA
AGCCAGGATACTGTGACCTTGGTAGAGAGGCTGCATACAATCTACATTTA
ATATATAAGAGTAGTGGAGCAGTTGATCTTGCTAGGCAGGTGTTAAAAGA
TCACTGCTCATTTTGAATATGAACTCTACATTGCAGACACTGGGTTCTGT
TTTACATTTATTTTAATGGATGTTTGCAGAACTATTGTTTAATACTAGTT
CATATATCTTATACAGTAATAATCGGAACTTTTGATCATTATGGATGTTG
TAACTAGGTGCTTTAGGCCGCTTAACATGTCTTTACCAACTAAATCTTGC
CTCGTTTTGTGCATGCTTCTCTAAAAACCGAAATGCATATTTTTCATTGC
ATTTAGTAATTAAGTAGGCATTATTTTTTTATTTCGAAATGGTCTGCCGA
CCATATTGATATAACATTATAATAACATATCCTATGTTTTAGGACATAGT
TCGAAATATTTACCCACTTCAATTATCTTTATTTTAAATGTTAAACTGAT
CTAATGTAATTGTAGGCATGCCAGACAAAACTCACCGGCACAGTAGCTAT
GAAACACAACAGAAACCTCAGAACAGGGACGGATACGCCGATCATAGACG
CCATTGCGCCCAGATCAAGCTCCATTGCTTTCTTATCGGCGAGCCTATCG
GTGTCGACGAAGCCACGATTTGCTTATTAA
Sequence Length:
12430
Sequence Checksum:
4501f9923ba9a4ff1c58acb3aa53809c
View location in JBrowse:
Cds:
>DCAR_001477cds ATGGAGGAGGATGAACAAATAGCAACAGATAATGTAACAAACAGCACCAG CACCAACACCAACCAAACAACTTTGTATTCTCCTCTACAACTAGAGGCAG AAGACGAGTACGGAGATGATGACGGAAACGACGATGTCGGAGATGAAGAA GAAGAGGAAGAAGAAGACGATATGAGTTATAAGATGAGATTCGAAGGCGA GATGGATCCATTGGATTTCATTGAGAATGATGCCTCGGCCGTTGACAAGT ATCATCAATTTCAGCGTATCGAGAATGAATATGAAGCTCTCGCTGCTCGA AAGCGTAAATCTCTCTCCACTCCTCTCTCTTCTAGCAATCCATCAAAAAA GCTTAGAAATGATGACGATCATGTAGAAACGTTTGAAGAAATAATGGAAG CAATGGCTTATAATTCAGGACGAAAACGGAGAAGGAAGAACAAGAAGAAA GGTAGGAGAAGGGGATCAAAGAAAAAAGTTAATCCAGTAGTGGCACGAAA GCTTGGTGAAGCTACACTTCATTATTCGAATGAACGTTATGAAGAAGCCA GATGTCTTTTAAAAGAAGTTATTCGGCTTGATCCTTATCTGCCTGACCCT TATTACAAGCTTGGCCTCGTCTATGAGCAACTTAAAGATAAAAAGAAGCA AATGGGTTGCTACATGCTTGCTGCCCATTCGTCACCAAAGGATGGATCTC TCTGGAAACTTCTTGTTCTATTGTCTGTAGAAGAAGGTAATAATGAACAG GCTATGTATTGCCTTTCCAAAGCTATTACAGCCGATCCTCAAGATCTCAG CCTTAGGTTTGACCGTGCTTCACTTTATGTTGAGCTGGGTGATTATCTAA AGGCTGCTGAATCGTATGAGCAAATTTCGCGGCTCCGTCCTGAACTTGTT GAAGCGGAGCTCCGCCCTGAACTTGTTGAAGCACTGAAAAAGGCCACAAA GTTATATCAAAAATGCGGTCAGCGTGAACGTGCTGTTAGTATTCTGGAGG AGTACGTTAAACGTAATCAAACTGAAGCTGAAATCAGCATTATTTATCTT CTAGTATCAATGCTCATCGAAGGCAGAGCATATATCAAGGCTCTGAATCA TATTGAGCATGCACAACAGGCTATTTTTTGTGTCTTGCAAAGGGGCAATG CATGTGATCGTCCACAAATAGTCACTGAAGTTGCTGATTCATTGGCAAAT CTTAAACACTATGAACTTGCATTGAAGTACTATATGATGTTAGAAGCAAT TGGCGACAATGACAGCGGTGTTCTATATTCAAGGATAGCAGAATGTAACT TACATCTAGGCGATCGACTACGATCAATTGAGTACTACTATAAAGCTCTG CCTAAACTCAATGACAGTGTTGATACACGGCTAAAGCTAGCATCGCTTCT TCTGGAGGAAAGCAAAGACGACGAAGCCATAAGTATACTTTGTCCTCCTA CTGATCATGAGTGTACATATGAACACAACTTGGACAAACCCGAACTATGG TGGACAAATTTCACTATAAAGCTAAAGCTTTCCCAGATCTACAAAGATAG AGGATCCTTGGACTCCTTTGTCGATACAATATATCCCTGTGTTCGGAAGT CATTTCTTGAGGCTATTCAACAAAAGGATAGAGCAAAGAGAAAGTTAACA AGAAGTGAATTGTTTGAAAGAGCCAAAGTGCTAGACAATCGTCAAAACGA TAATGTATTCCATGGCTTTAGACCTATGGCGTCAACGTCGGATTTAACAA AAGCTACCAGAGCAAAGAAGTTGCTTCAAAAGAAAGAAGCATTAAGGGAA GAAAAAAGAGCTGCTGCATTGGCTGCAGGAGTTGAATATAAAAGCGATGA ATCAGATGTTGAACCTCCTCAAGTCACAAGGAGACGTCCTCTGCCGAATC TCCTGGTAGACGAGGAATATCATTGCCTCATAATAGATTTATGCAAGTCA CTTGCATCTCTTCAAAAATACTGGGAAGCACTTGAAATCATTGATATTAG TCTGAAATTGGCATGTAGCACTCTCTCTGTAGAGAGGAAGGAGGAGCTTC GGTCCATTGGAGCTCAAATAGCCTATAATATCGGTGATCCTTCGCATGGA TGGGATTGTGCACGATACATAGTCAATCAGCATCCATACAGCTTCGCTGC ATGGAACTGTTACTACAAAGTAATTTCGAGGCTGGATAATAGGTATTCGA AGCACGGCAAGTTCCTTCATTCTATGCGAGTAAAACACAAAGATTGCGTA CCTCCGTATATTATATTCGGCCATCAGCTTACTATGATCAGTCAGCATCA GGCAGCTGCAAAAGATTATTTAGAAGCTTATAAACTGATGCCAGACAATC CCTTGATCAATTTATGTGTAGGTTCTGCCTTAATTAACTTAGCCCTTGGT CATAGACTCCAGAACAAACATCAATGTGTCATGCAAGGCTTGGCATTCCT CTTTAAGAATTTGCTACTTTCTGAAAACAGCCAGGAAGCATTATACAACA TAGCTCGTGCATATCACCACGTGGGTCTTGTTACCCTTGCTGCTACATTT TATGAGAAGGTGCTTGCAATACGTGAAAAAGACTACCCAATACCTAAGCT ACCTAATGAGAATCAAGATGGTGTCGAGAGTCGGAAGCCAGGATACTGTG ACCTTGGTAGAGAGGCTGCATACAATCTACATTTAATATATAAGAGTAGT GGAGCAGTTGATCTTGCTAGGCAGGCATGCCAGACAAAACTCACCGGCAC AGTAGCTATGAAACACAACAGAAACCTCAGAACAGGGACGGATACGCCGA TCATAGACGCCATTGCGCCCAGATCAAGCTCCATTGCTTTCTTATCGGCG AGCCTATCGGTGTCGACGAAGCCACGATTTGCTTATTAA
Pep:
>DCAR_001477pep MEEDEQIATDNVTNSTSTNTNQTTLYSPLQLEAEDEYGDDDGNDDVGDEE EEEEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAAR KRKSLSTPLSSSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKK GRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDP YYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQ AMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELV EAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYL LVSMLIEGRAYIKALNHIEHAQQAIFCVLQRGNACDRPQIVTEVADSLAN LKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKAL PKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELW WTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKSFLEAIQQKDRAKRKLT RSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALRE EKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKS LASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHG WDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCV PPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALG HRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATF YEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSS GAVDLARQACQTKLTGTVAMKHNRNLRTGTDTPIIDAIAPRSSSIAFLSA SLSVSTKPRFAY*