MK001030 GSSR-031

Resource Type: 
Genetic Marker
Name: 
MK001030 GSSR-031
Identifier: 
MK001030_GSSR_031
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  2. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
  3. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
  4. Alessandro MS, Galmarini CR, Iorizzo M, Simon PW. Molecular mapping of vernalization requirement and fertility restoration genes in carrot.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2013 Feb; 126(2):415-23.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 7 relationships.
Relationships
The genetic_marker, MK001030 GSSR-031, is adjacent to primer, GSSR-31-F.
The genetic_marker, MK001030 GSSR-031, is adjacent to primer, GSSR-31-R.
The genetic_marker, MK001030 GSSR-031, is adjacent to primer, GSSR-31-F.
The genetic_marker, MK001030 GSSR-031, is adjacent to primer, GSSR-31-R.
The genetic_marker, MK001030 GSSR-031, is located in gene, DCAR_009917.
The genetic_marker, MK001030 GSSR-031, is located in gene, LOC108211878.
The marker_locus, GSSR-031, is an instance of genetic_marker, MK001030 GSSR-031.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 B493×QAL B493LG0348.5GSSR-031MapViewer
2013 Criolla×Bienal332.1GSSR-031MapViewer
2015 SFF×HM2Chr313.049GSSR-031MapViewer
2014 J.Parsons Th. SFF×HM2Chr313.049GSSR-031MapViewer
2011 B493×QAL QALLG0358.4GSSR-031MapViewer
Synonyms: 
  • MK001030
Sequence Coordinates: 
DCARv2_Chr3:12499467..12499814+
View location in JBrowse: 
DCARv2_Chr3:12499467..12499814+
Sequence: 
CCATCCTCTGCTTTCGTGTTAGAATATGATCCTGGTAAGCTCTCCTCCTA
ACACCTCGAGGTTTTAGGAGAATTGGTCACTTAACATTTCGCAATTCCGT
CTCTCTTAATTGTTAATGGTAATCCTGGTTGAATGCAAAAACAAATAGCG
ATTAGTACAATATCGCCCACTTCAAACACTTAAAACATTCGAGTTGGATT
CTAACTGGCCTCAAACATATATAAGAGGAAACGAATGATGCATAAAAGGC
ACGGCAGGGAGGAAATATAAGTTCATATCTTCACGAGTCACGGATACAGC
TGAGCGATATTTGTAGTTTGATACGCATTATTATTGCAAACAAACAAATT
CTATTACAGGAGACATCAAATATAATAACTGCAGTTTGTTTGTTTGTTTG
TTTGTTTGTTTGTTTCATGTTTGGCATGCATGAGAAATTGAGAATTATAG
CTCACGGGTTAGTTCAACTATCATACTGCTTCATTTCACTTTCATGACAT
AGAATTATATATGAATGTCTAGAATCTTAGAAAAGACATTGCACAATGCT
GCACGCCTTTGTTGCGGAAATATACATATAATAACAAAATTAAATTGGCA
GGTGTGTTGGGGAAAA
Sequences: 
>MK001030_GSSR_031 ID=MK001030_GSSR_031; Name=MK001030 GSSR-031; organism=Daucus carota; type=genetic_marker
CCATCCTCTGCTTTCGTGTTAGAATATGATCCTGGTAAGCTCTCCTCCTA
ACACCTCGAGGTTTTAGGAGAATTGGTCACTTAACATTTCGCAATTCCGT
CTCTCTTAATTGTTAATGGTAATCCTGGTTGAATGCAAAAACAAATAGCG
ATTAGTACAATATCGCCCACTTCAAACACTTAAAACATTCGAGTTGGATT
CTAACTGGCCTCAAACATATATAAGAGGAAACGAATGATGCATAAAAGGC
ACGGCAGGGAGGAAATATAAGTTCATATCTTCACGAGTCACGGATACAGC
TGAGCGATATTTGTAGTTTGATACGCATTATTATTGCAAACAAACAAATT
CTATTACAGGAGACATCAAATATAATAACTGCAGTTTGTTTGTTTGTTTG
TTTGTTTGTTTGTTTCATGTTTGGCATGCATGAGAAATTGAGAATTATAG
CTCACGGGTTAGTTCAACTATCATACTGCTTCATTTCACTTTCATGACAT
AGAATTATATATGAATGTCTAGAATCTTAGAAAAGACATTGCACAATGCT
GCACGCCTTTGTTGCGGAAATATACATATAATAACAAAATTAAATTGGCA
GGTGTGTTGGGGAAAA
This is the primary representative sequence for this feature.
Sequence Length: 
616