Resource Type:
Genetic Marker
Name:
MK000013 SCAR-AFLP3
Identifier:
MK000013_SCAR_AFLP3
Organism:
Marker Type:
SCAR
Is Codominant:
Yes
Publication:
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
- Carlos Antonio Fernandes Santos. Biometrical studies and quantitative trait loci associated with major products of the carotenoid pathway of carrot (Daucus carota L.). Ph.D. Thesis. 2001. University of Wisconsin-Madison
Relationship:
Relationships |
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The genetic_marker, MK000013 SCAR-AFLP3, is adjacent to primer, Frag2Left. |
The genetic_marker, MK000013 SCAR-AFLP3, is adjacent to primer, Frag2Right. |
The genetic_marker, MK000013 SCAR-AFLP3, is located in gene, DCAR_014396. |
The genetic_marker, MK000013 SCAR-AFLP3, is located in gene, LOC108216915. |
The marker_locus, SCAR-AFLP3, is an instance of genetic_marker, MK000013 SCAR-AFLP3. |
MapViewer Marker Map Positions:
Synonyms:
- MK000013
Sequence Coordinates:
DCARv2_Chr4:22184612..22185094-
View location in JBrowse:
Sequence:
TAACTTCTCATTCAATCTTTCTGGATTGTCACTTTCACTAGCTAACTCTG
AGGATGCCATTGATGCTACAGCTAGATGTCCAATATAGTCTTCGAAAAGC
TCACTTCCAAAAAGAAGAGCAAAGACAGCAGTGGGATCAAGCATGGTGTC
CCTGAGATGTAACTCATCATATCAGACACATTGCATACACTAAAGAAAAT
TTTGATCCAAAGTCATCATGTAAGAGTACCACTGTACGAGTAATTGGAAA
TCACATTCTCTAGTTATGAGCAAACTGATTTCCTAATCAATTACATTATT
ATACCTCACATTGTCAAACATGAGCATATAAAGAAGATGCTTACTTAGAT
ATGCAATACTTTCCATTGCGATCATATGCATCCCTTTGCACTGGATCACT
CAAAACCTGATAAGCTTCCCCTAGTACCTGCA
Sequences:
>MK000013_SCAR_AFLP3 ID=MK000013_SCAR_AFLP3; Name=MK000013 SCAR-AFLP3; organism=Daucus carota; type=genetic_marker
TAACTTCTCATTCAATCTTTCTGGATTGTCACTTTCACTAGCTAACTCTG
AGGATGCCATTGATGCTACAGCTAGATGTCCAATATAGTCTTCGAAAAGC
TCACTTCCAAAAAGAAGAGCAAAGACAGCAGTGGGATCAAGCATGGTGTC
CCTGAGATGTAACTCATCATATCAGACACATTGCATACACTAAAGAAAAT
TTTGATCCAAAGTCATCATGTAAGAGTACCACTGTACGAGTAATTGGAAA
TCACATTCTCTAGTTATGAGCAAACTGATTTCCTAATCAATTACATTATT
ATACCTCACATTGTCAAACATGAGCATATAAAGAAGATGCTTACTTAGAT
ATGCAATACTTTCCATTGCGATCATATGCATCCCTTTGCACTGGATCACT
CAAAACCTGATAAGCTTCCCCTAGTACCTGCA
This is the primary representative sequence for this feature.
Sequence Length:
432
Screening Method:
Product size by agarose gel
Pcr Condition:
35 cycles of {94°C 0:30; 56°C 0:40; 70°C 1:00}