MK000013 SCAR-AFLP3

Resource Type: 
Genetic Marker
Name: 
MK000013 SCAR-AFLP3
Identifier: 
MK000013_SCAR_AFLP3
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SCAR
Is Codominant: 
Yes
Publication: 
  1. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
  2. Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
  3. Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
  4. Carlos Antonio Fernandes Santos. Biometrical studies and quantitative trait loci associated with major products of the carotenoid pathway of carrot (Daucus carota L.). Ph.D. Thesis. 2001. University of Wisconsin-Madison
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK000013 SCAR-AFLP3, is adjacent to primer, Frag2Left.
The genetic_marker, MK000013 SCAR-AFLP3, is adjacent to primer, Frag2Right.
The genetic_marker, MK000013 SCAR-AFLP3, is located in gene, DCAR_014396.
The genetic_marker, MK000013 SCAR-AFLP3, is located in gene, LOC108216915.
The marker_locus, SCAR-AFLP3, is an instance of genetic_marker, MK000013 SCAR-AFLP3.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 B493×QAL QALLG0461SCAR-AFLP3MapViewer
2011 B493×QAL B493LG0454.8SCAR-AFLP3MapViewer
2007 B493×QAL Ver3 QALLG0661.6SCAR-AFLP3MapViewer
2001 Brasília×HCM BsbLG0618.1SCAR-AFLP3MapViewer
2007 B493×QAL Ver3 B493LG0641SCAR-AFLP3MapViewer
Synonyms: 
  • MK000013
Sequence Coordinates: 
DCARv2_Chr4:22184612..22185094-
View location in JBrowse: 
DCARv2_Chr4:22184612..22185094-
Sequence: 
TAACTTCTCATTCAATCTTTCTGGATTGTCACTTTCACTAGCTAACTCTG
AGGATGCCATTGATGCTACAGCTAGATGTCCAATATAGTCTTCGAAAAGC
TCACTTCCAAAAAGAAGAGCAAAGACAGCAGTGGGATCAAGCATGGTGTC
CCTGAGATGTAACTCATCATATCAGACACATTGCATACACTAAAGAAAAT
TTTGATCCAAAGTCATCATGTAAGAGTACCACTGTACGAGTAATTGGAAA
TCACATTCTCTAGTTATGAGCAAACTGATTTCCTAATCAATTACATTATT
ATACCTCACATTGTCAAACATGAGCATATAAAGAAGATGCTTACTTAGAT
ATGCAATACTTTCCATTGCGATCATATGCATCCCTTTGCACTGGATCACT
CAAAACCTGATAAGCTTCCCCTAGTACCTGCA
Sequences: 
>MK000013_SCAR_AFLP3 ID=MK000013_SCAR_AFLP3; Name=MK000013 SCAR-AFLP3; organism=Daucus carota; type=genetic_marker
TAACTTCTCATTCAATCTTTCTGGATTGTCACTTTCACTAGCTAACTCTG
AGGATGCCATTGATGCTACAGCTAGATGTCCAATATAGTCTTCGAAAAGC
TCACTTCCAAAAAGAAGAGCAAAGACAGCAGTGGGATCAAGCATGGTGTC
CCTGAGATGTAACTCATCATATCAGACACATTGCATACACTAAAGAAAAT
TTTGATCCAAAGTCATCATGTAAGAGTACCACTGTACGAGTAATTGGAAA
TCACATTCTCTAGTTATGAGCAAACTGATTTCCTAATCAATTACATTATT
ATACCTCACATTGTCAAACATGAGCATATAAAGAAGATGCTTACTTAGAT
ATGCAATACTTTCCATTGCGATCATATGCATCCCTTTGCACTGGATCACT
CAAAACCTGATAAGCTTCCCCTAGTACCTGCA
This is the primary representative sequence for this feature.
Sequence Length: 
432
Screening Method: 
Product size by agarose gel
Pcr Condition: 
35 cycles of {94°C 0:30; 56°C 0:40; 70°C 1:00}