Resource Type:
Genetic Marker
Name:
MK000037 ZDS1
Identifier:
MK000037_ZDS1
Organism:
Marker Type:
STS-Sanger
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000037 ZDS1, is adjacent to primer, ZDS-F2. |
| The genetic_marker, MK000037 ZDS1, is adjacent to primer, ZDS1-R(int)corr. |
| The genetic_marker, MK000037 ZDS1, is adjacent to gene, DCAR_006616. |
| The genetic_marker, MK000037 ZDS1, is adjacent to gene, LOC108209330. |
| The marker_locus, ZDS1, is an instance of genetic_marker, MK000037 ZDS1. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG full map | CH2 | 17.06 | ZDS1 | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG04 | 25.6 | ZDS1 | MapViewer |
| 2011 B493×QAL B493 | LG02 | 89 | ZDS1 | MapViewer |
| 2011 B493×QAL QAL | LG02 | 72.3 | ZDS1 | MapViewer |
| 2011 FISH | CHR02 | 11.929 | ZDS1 | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG04 | 24.5 | ZDS1 | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG04 | 12.2 | ZDS1 | MapViewer |
| 2002 B493×QAL Ver2 QAL | LG04 | 19.7 | ZDS1 | MapViewer |
| 2011 FISH | CHR02 | 13.566 | ZDS1 | MapViewer |
Synonyms:
- MK000037
- C095H14
Sequence Coordinates:
DCARv2_Chr2:27154100..27157506-
View location in JBrowse:
Sequence:
GAACTCTTATCATCGACAAAAATTTGAGTTCTCAGTATCTTCTTATTTTC
ACTCTCTTTGATTCCTTCTTGCGATTCTCTTTTATTTCTTCCGCCTTCCA
ACCCATTTAATTTTATACTCACTATTTGTTTCTTTCTCTCTGAAAATGGC
CGCCGCTTCTTCGTCTTTGTATTTTCCGGCCACTTTCACCGCTGATTCTC
CCTCTTTCTCGTTCTCCGCTCGGCGACCCTTTAAGCCCAAGAGGATGATG
TTGCTTGTTCGCTCCGATTTGGATCAAAATGTTTCCGACATGAGCTCAAA
TGCTCCGAAAGGGTTATTTCCGCCGGAACCTCAGCTTTATCGTGGACCGA
AGCTAAAAGTGGCTATTATAGGAGCTGGGCTTGCGGGAATGTCTACCGCT
GTTGAGCTTCTAGATCAGGGCCACGAGGTGGATATATATGAATCAAGGCC
TTTTATTGGTGGAAAAGTGGGTTCTTTCACTGATAAACGCGGAAATCATA
TAGAAATGGGACTTCATGTATTCTTTGGTTGCTACAATAATCTTTTCCGT
CTCTTGAAAAAGGTTGGGGCTGATAAAAATCTTCTCGTGAAGGAGCATAC
TCACACTTTTGTAAACAAAGGGGGTGAAATTGGTGAGCTTGATTTTCGTT
TCCCAGTTGGAGCACCATTACACGGCATAAATGCATTTCTGACTACCAAT
CAGCTCAAGACTTATGATAAAGCAAGAAATGCTGTAGCCCTTGCCCTTAG
TCCAGTTGTGCGGGCACTTGTTGATCCAGATGGCGCAATGAAGGACATAC
GAAATCTGGATAATATAAGCTTTTCTGAATGGTTCTTGTCTAAAGGGGGA
ACGCGAAAGAGTATTCAGAGAATGTGGGATCCTGTTGCTTATGCTCTCGG
GTTTATTGACTGTGATAACATGAGTGCTCGTTGTATGCTCACGATTTTCT
CATTGTTTGCCACTAAAACAGAAGCATCCCTTTTGCGCATGCTTAAAGGT
TCTCCAGATACTTATTTAAGTGGGCCCATTCGAGACTACATTACACAGAA
GGGGGGCAGGTTCCATCTCAGGTGGGGATGCCGAGAAATTCTTTATGAAA
AATCTAGTGATGGACAGACATACATTTCAGGCATTGCCATGTCCAAGGCA
ACTCAAAAGAAAATCGTAAAAGCAGATGCCTACGTCGCAGCATGCGATGT
CCCTGGAATCAAAAGATTATTACCCTCACAGTGGAGAGAGTGGGAGTTCT
TCGACAATATCTACAAACTAGTTGGTGTTCCTGTTGTCACAGTACAACTT
AGATACAATGGCTGGGTTACAGAGATGCAAGATCTAGAAAAGTCAAGGCA
ACTGAGGCAAGCAGCAGGATTGGATAATCTCCTTTATACCCCAGATGCAG
ATTTCTCTTGTTTTGCTGACTTAGCTCTTGCATCTCCAGAAGATTACTAT
CTTGAGGGTCAAGGCTCGTTACTCCAATGTGTGCTCACCCCAGGCGATCC
CTACATGCCTCTACCAAATGATCAAATCATAGAGAGAGTTACCAAGCAGG
TTTTGACTTTGTTCCCATCCTCTCAAGGCCTGGAAGTTACATGGTCATCA
GTTGTGAAGATTGCGCAGTCATTATACCGTGAGGGGCCTGGTAAAGATCC
TTTTAGACCTGATCAGAAGACCCCTGTGGGAAACTTTTTCCTTGCTGGCT
CATATACGAAGCAGGATTATATAGACAGTATGGAAGGTGCAACTCTTTCA
GGTAGGCAAGCTTCTGCCTACATTTGTGATGCTGGAGAAGAATTAACGAC
CTTGCGAAAAACAATTGCTTCAATCGACTCCAACACACCTACAGAAGCTG
AGTTAACCCTTGTCTGATGCACTACGTTATAGCTGTATTCGGACCACTAG
AAGGTGATCATACACATGTATGTACTTTCTTACAGTTGAATTGTACCAAG
AGAACCTAATGGAACGTCAATGTTGTATTCTAGGATGTCTTGGCGATCAT
TAGTTTTCTTTGGCTCAGTCTCGAGGTTATATATAAAGATAAAGGACATC
TTATTCCAAGGGATACGTTTACTTGGTT
Sequences:
>MK000037_ZDS1 ID=MK000037_ZDS1; Name=MK000037 ZDS1; organism=Daucus carota; type=genetic_marker
GAACTCTTATCATCGACAAAAATTTGAGTTCTCAGTATCTTCTTATTTTC
ACTCTCTTTGATTCCTTCTTGCGATTCTCTTTTATTTCTTCCGCCTTCCA
ACCCATTTAATTTTATACTCACTATTTGTTTCTTTCTCTCTGAAAATGGC
CGCCGCTTCTTCGTCTTTGTATTTTCCGGCCACTTTCACCGCTGATTCTC
CCTCTTTCTCGTTCTCCGCTCGGCGACCCTTTAAGCCCAAGAGGATGATG
TTGCTTGTTCGCTCCGATTTGGATCAAAATGTTTCCGACATGAGCTCAAA
TGCTCCGAAAGGGTTATTTCCGCCGGAACCTCAGCTTTATCGTGGACCGA
AGCTAAAAGTGGCTATTATAGGAGCTGGGCTTGCGGGAATGTCTACCGCT
GTTGAGCTTCTAGATCAGGGCCACGAGGTGGATATATATGAATCAAGGCC
TTTTATTGGTGGAAAAGTGGGTTCTTTCACTGATAAACGCGGAAATCATA
TAGAAATGGGACTTCATGTATTCTTTGGTTGCTACAATAATCTTTTCCGT
CTCTTGAAAAAGGTTGGGGCTGATAAAAATCTTCTCGTGAAGGAGCATAC
TCACACTTTTGTAAACAAAGGGGGTGAAATTGGTGAGCTTGATTTTCGTT
TCCCAGTTGGAGCACCATTACACGGCATAAATGCATTTCTGACTACCAAT
CAGCTCAAGACTTATGATAAAGCAAGAAATGCTGTAGCCCTTGCCCTTAG
TCCAGTTGTGCGGGCACTTGTTGATCCAGATGGCGCAATGAAGGACATAC
GAAATCTGGATAATATAAGCTTTTCTGAATGGTTCTTGTCTAAAGGGGGA
ACGCGAAAGAGTATTCAGAGAATGTGGGATCCTGTTGCTTATGCTCTCGG
GTTTATTGACTGTGATAACATGAGTGCTCGTTGTATGCTCACGATTTTCT
CATTGTTTGCCACTAAAACAGAAGCATCCCTTTTGCGCATGCTTAAAGGT
TCTCCAGATACTTATTTAAGTGGGCCCATTCGAGACTACATTACACAGAA
GGGGGGCAGGTTCCATCTCAGGTGGGGATGCCGAGAAATTCTTTATGAAA
AATCTAGTGATGGACAGACATACATTTCAGGCATTGCCATGTCCAAGGCA
ACTCAAAAGAAAATCGTAAAAGCAGATGCCTACGTCGCAGCATGCGATGT
CCCTGGAATCAAAAGATTATTACCCTCACAGTGGAGAGAGTGGGAGTTCT
TCGACAATATCTACAAACTAGTTGGTGTTCCTGTTGTCACAGTACAACTT
AGATACAATGGCTGGGTTACAGAGATGCAAGATCTAGAAAAGTCAAGGCA
ACTGAGGCAAGCAGCAGGATTGGATAATCTCCTTTATACCCCAGATGCAG
ATTTCTCTTGTTTTGCTGACTTAGCTCTTGCATCTCCAGAAGATTACTAT
CTTGAGGGTCAAGGCTCGTTACTCCAATGTGTGCTCACCCCAGGCGATCC
CTACATGCCTCTACCAAATGATCAAATCATAGAGAGAGTTACCAAGCAGG
TTTTGACTTTGTTCCCATCCTCTCAAGGCCTGGAAGTTACATGGTCATCA
GTTGTGAAGATTGCGCAGTCATTATACCGTGAGGGGCCTGGTAAAGATCC
TTTTAGACCTGATCAGAAGACCCCTGTGGGAAACTTTTTCCTTGCTGGCT
CATATACGAAGCAGGATTATATAGACAGTATGGAAGGTGCAACTCTTTCA
GGTAGGCAAGCTTCTGCCTACATTTGTGATGCTGGAGAAGAATTAACGAC
CTTGCGAAAAACAATTGCTTCAATCGACTCCAACACACCTACAGAAGCTG
AGTTAACCCTTGTCTGATGCACTACGTTATAGCTGTATTCGGACCACTAG
AAGGTGATCATACACATGTATGTACTTTCTTACAGTTGAATTGTACCAAG
AGAACCTAATGGAACGTCAATGTTGTATTCTAGGATGTCTTGGCGATCAT
TAGTTTTCTTTGGCTCAGTCTCGAGGTTATATATAAAGATAAAGGACATC
TTATTCCAAGGGATACGTTTACTTGGTT
This is the primary representative sequence for this feature.
Sequence Length:
2078