Resource Type:
Genetic Marker
Name:
MK000035 CRTISO
Identifier:
MK000035_CRTISO
Organism:
Marker Type:
STS-Sanger
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000035 CRTISO, is adjacent to primer, CRTISO-5'UTRendF. |
| The genetic_marker, MK000035 CRTISO, is adjacent to primer, CRTISO-5'CDSendR. |
| The genetic_marker, MK000035 CRTISO, is located in gene, DCAR_013459. |
| The genetic_marker, MK000035 CRTISO, is located in gene, LOC108219304. |
| The marker_locus, CRTISO, is an instance of genetic_marker, MK000035 CRTISO. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2002 B493×QAL Ver2 B493 | LG06 | 23.1 | CRTISO | MapViewer |
| 2016 Integ NG full map | CH4 | 62.468 | CRTISO | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG06 | 22.7 | CRTISO | MapViewer |
| 2002 B493×QAL Ver2 QAL | LG06 | 14.8 | CRTISO | MapViewer |
| 2011 B493×QAL QAL | LG04 | 44.1 | CRTISO | MapViewer |
| 2011 FISH | CHR04 | 17.842 | CRTISO | MapViewer |
| 2011 B493×QAL B493 | LG04 | 39.6 | CRTISO | MapViewer |
| 2016 Integ NG bin map | CH4 | 60.586 | CRTISO | MapViewer |
| 2011 FISH | CHR04 | 19.204 | CRTISO | MapViewer |
| 2016 70349 NG bin map | Chr4 | 5.152 | CRTISO | MapViewer |
| 2016 70349 NG full map | Chr4 | 5.152 | CRTISO | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG06 | 42.7 | CRTISO | MapViewer |
Synonyms:
- MK000035
- C069N01
Sequence Coordinates:
DCARv2_Chr4:30021302..30021726-
View location in JBrowse:
Sequence:
AACCATACACACAATCACCTTCCTCCCCAAAGCAAATTAATCTCTCCATC
TTTCTTGATTTAAGCACCCACAATTTGACACCCAGAAGCTAAATTCAAGA
ATTAGTATGTCTACTAGCATCTTTGAAACCCCATTACCAAGAAGTGATCT
TTTTTTATGTAGCAACAGTTTATTGTCTCAAAATTATAAACTTTTTGATA
ATTCCAGGAGTTTTGGGTTGAAAAGCCTCAGACCCAGATGTCAGAAAGAT
GGACTTTTGTATCCAAAGCCCTTGAATTTTGGGTTTTGTAGGGTGAGTAG
GAGAAAGAGGAAGCCTAATTTTGTGTTGAATTCTGTGCTGAGTGTTGATA
AAGAGTTGGAGAGTGATGAAACTGTGGGATTGGGTAGGAGTAGAGAGTAT
GATGCTATTGTGATTGGGTCTGGGATTGGTGGTTTGGTTGCAGCAACACA
GTTGGCTGTGAAGGGTGCTAAGGTTCTAGTGCTTGAAAAGTATTTGATTC
CTGGTGGGAGCTCTGGATATTACGAAAGAGATGGTTTTACATTCGATGTT
GGATCATCTGTGATGTTTGGCTTCAGTGATAAGGGGAATCTTAACTTGAT
AACTCAAGCATTGGCGGCAGTTGGCTGTAAGATGGAGGTGATACCTGACC
CCAGTACTGTCCATTTTCATCTACCTAGTAATCTTTCTGTCCTAGTACAT
AGAGAATATAATGAGTTCTTCTCCGAACTGACAAGCAAATTTCCACATGA
AAAGGAAGGAATATTTAAATTTTATGGTGAATGCTGGAAGATTTTTAATG
CCTTGAACTCATTGGAACTGAAGTCACTCGAGGAACCAATCTACCTGTTT
GGGCAGTTCTTTAAAAAGCCTATGGAATGCCTAACACTGGCATACTATTT
GCCTCAAAATGCTGGAGACATAGCTCGGAAGTTCATAAAAGATCCGGAGG
TTCTGTCCTTTATAGATGCTGAGTGCTTTATTGTGAGTACCGTTAATGCG
TTGAAGACACCAATGATCAACGCAAGCATGGTTCTGTGTGACAGACACTA
TGGGGGAATTAACTATCCTGTTGGTGGGGTTGGTGGGATCGCAAAATCAT
TAGCAAAAGGATTAGTCGACCAGGGAAGCGAAATACAATACAAAGCAAAT
GTTAAGAGCATTATAGTTGAAAATGGAAAAGCCGTAGGAGTTCGGCTGGC
GAATGGAAATGAGATATTTGCTAAGAACATAATTTCAAATGCTACCAGAT
GGGATACTTTTGGGAAGCTTCTAAAACAGGATGAATTACCTAAAGAAGAA
GAAAATTTTCAGAAACTTTACATAAAGGCCCCGTCATTTCTTTCTATTCA
CTTGGGAGTTAAATCTGATGTTTTGCCTCCAGATACGGATTGCCACCATT
TTGTGCTCGAGGATGATTGGTCAAATTTAGAGGTTCCATATGGTAGTATA
TTCCTGAGCATTCCGACTGTCCTTGATTCATCATTAGCTCCAGAAGGGAA
TCATATTCTTCACATATTTACAACTTCTTCCATAGAGGACTGGCAGGGGA
TGTCTCAAAAAGATTATGAGAAGAAGAAGGAGCTTGTAGCTGACGAGATT
ATAAGCCGACTGGAAAAGAAACTATTTCCTGGTCTCCAGTCTTCCATTGT
TTTAAAGGAGGTCGGGACACCTAAGACACACAGGCGCTACCTTGCTCGTG
ATAGTGGTACCTATGGACCTATGCCACAGGGTACCCCAAAGGGTTTACTA
GGAATGCCATTTAATACAACTGCAATTGACGGTTTGTACTGTGTGGGGGA
TAGTTGCTTTCCAGGACAAGGTGTTATAGCCGTTGCATTCTCAGGAGTGA
TGTGTGCTCATCGAGTTGCTGCTGATTTAGGGCTTGAGCAGAAATCTCCC
ATTTTGGATGCTGCTCTCCTTCGTCTACTGGGTTGGTTCAGGACACTAGC
ATAAAGAGTTCAATCATAAAATGTGACTTACATGAAGGGCAGAAGGTTGC
TTCTGATACGAGGTCATGTTCAATTTGATATTTAGTCTCTCTTCGAAAAA
TTCAATTGAGGTATCAAGGAACTAGGGGAAGTTTTATTCTTACCTATGTT
GAATAGTACGTGGCTTTTTTCCAATATATGTTTTGTTTTGGTGGTTCCCA
AGTGTGTGAACCACAAAACATTTTTTTCCTCATATATAACAAAGTCAACT
TGTGATGTTAAAATCTTGTGTCATATATGCATTCCGTCTACTGATATATA
TTTTTTAAATTCATGGATC
Sequences:
>MK000035_CRTISO ID=MK000035_CRTISO; Name=MK000035 CRTISO; organism=Daucus carota; type=genetic_marker
AACCATACACACAATCACCTTCCTCCCCAAAGCAAATTAATCTCTCCATC
TTTCTTGATTTAAGCACCCACAATTTGACACCCAGAAGCTAAATTCAAGA
ATTAGTATGTCTACTAGCATCTTTGAAACCCCATTACCAAGAAGTGATCT
TTTTTTATGTAGCAACAGTTTATTGTCTCAAAATTATAAACTTTTTGATA
ATTCCAGGAGTTTTGGGTTGAAAAGCCTCAGACCCAGATGTCAGAAAGAT
GGACTTTTGTATCCAAAGCCCTTGAATTTTGGGTTTTGTAGGGTGAGTAG
GAGAAAGAGGAAGCCTAATTTTGTGTTGAATTCTGTGCTGAGTGTTGATA
AAGAGTTGGAGAGTGATGAAACTGTGGGATTGGGTAGGAGTAGAGAGTAT
GATGCTATTGTGATTGGGTCTGGGATTGGTGGTTTGGTTGCAGCAACACA
GTTGGCTGTGAAGGGTGCTAAGGTTCTAGTGCTTGAAAAGTATTTGATTC
CTGGTGGGAGCTCTGGATATTACGAAAGAGATGGTTTTACATTCGATGTT
GGATCATCTGTGATGTTTGGCTTCAGTGATAAGGGGAATCTTAACTTGAT
AACTCAAGCATTGGCGGCAGTTGGCTGTAAGATGGAGGTGATACCTGACC
CCAGTACTGTCCATTTTCATCTACCTAGTAATCTTTCTGTCCTAGTACAT
AGAGAATATAATGAGTTCTTCTCCGAACTGACAAGCAAATTTCCACATGA
AAAGGAAGGAATATTTAAATTTTATGGTGAATGCTGGAAGATTTTTAATG
CCTTGAACTCATTGGAACTGAAGTCACTCGAGGAACCAATCTACCTGTTT
GGGCAGTTCTTTAAAAAGCCTATGGAATGCCTAACACTGGCATACTATTT
GCCTCAAAATGCTGGAGACATAGCTCGGAAGTTCATAAAAGATCCGGAGG
TTCTGTCCTTTATAGATGCTGAGTGCTTTATTGTGAGTACCGTTAATGCG
TTGAAGACACCAATGATCAACGCAAGCATGGTTCTGTGTGACAGACACTA
TGGGGGAATTAACTATCCTGTTGGTGGGGTTGGTGGGATCGCAAAATCAT
TAGCAAAAGGATTAGTCGACCAGGGAAGCGAAATACAATACAAAGCAAAT
GTTAAGAGCATTATAGTTGAAAATGGAAAAGCCGTAGGAGTTCGGCTGGC
GAATGGAAATGAGATATTTGCTAAGAACATAATTTCAAATGCTACCAGAT
GGGATACTTTTGGGAAGCTTCTAAAACAGGATGAATTACCTAAAGAAGAA
GAAAATTTTCAGAAACTTTACATAAAGGCCCCGTCATTTCTTTCTATTCA
CTTGGGAGTTAAATCTGATGTTTTGCCTCCAGATACGGATTGCCACCATT
TTGTGCTCGAGGATGATTGGTCAAATTTAGAGGTTCCATATGGTAGTATA
TTCCTGAGCATTCCGACTGTCCTTGATTCATCATTAGCTCCAGAAGGGAA
TCATATTCTTCACATATTTACAACTTCTTCCATAGAGGACTGGCAGGGGA
TGTCTCAAAAAGATTATGAGAAGAAGAAGGAGCTTGTAGCTGACGAGATT
ATAAGCCGACTGGAAAAGAAACTATTTCCTGGTCTCCAGTCTTCCATTGT
TTTAAAGGAGGTCGGGACACCTAAGACACACAGGCGCTACCTTGCTCGTG
ATAGTGGTACCTATGGACCTATGCCACAGGGTACCCCAAAGGGTTTACTA
GGAATGCCATTTAATACAACTGCAATTGACGGTTTGTACTGTGTGGGGGA
TAGTTGCTTTCCAGGACAAGGTGTTATAGCCGTTGCATTCTCAGGAGTGA
TGTGTGCTCATCGAGTTGCTGCTGATTTAGGGCTTGAGCAGAAATCTCCC
ATTTTGGATGCTGCTCTCCTTCGTCTACTGGGTTGGTTCAGGACACTAGC
ATAAAGAGTTCAATCATAAAATGTGACTTACATGAAGGGCAGAAGGTTGC
TTCTGATACGAGGTCATGTTCAATTTGATATTTAGTCTCTCTTCGAAAAA
TTCAATTGAGGTATCAAGGAACTAGGGGAAGTTTTATTCTTACCTATGTT
GAATAGTACGTGGCTTTTTTCCAATATATGTTTTGTTTTGGTGGTTCCCA
AGTGTGTGAACCACAAAACATTTTTTTCCTCATATATAACAAAGTCAACT
TGTGATGTTAAAATCTTGTGTCATATATGCATTCCGTCTACTGATATATA
TTTTTTAAATTCATGGATC
This is the primary representative sequence for this feature.
Sequence Length:
2269