Resource Type:
Genetic Marker
Name:
MK000036 PDS
Identifier:
MK000036_PDS
Organism:
Marker Type:
STS-Sanger
Publication:
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000036 PDS, is adjacent to primer, PDS-F1. |
| The genetic_marker, MK000036 PDS, is adjacent to primer, PDS-R1. |
| The genetic_marker, MK000036 PDS, is located in gene, DCAR_016085. |
| The genetic_marker, MK000036 PDS, is located in gene, LOC108222758. |
| The marker_locus, PDS, is an instance of genetic_marker, MK000036 PDS. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2007 B493×QAL Ver3 QAL | LG02 | 162.1 | PDS | MapViewer |
| 2011 B493×QAL B493 | LG05 | 0 | PDS | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG02 | 111.7 | PDS | MapViewer |
| 2011 FISH | CHR05 | 0.193 | PDS | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG02 | 0 | PDS | MapViewer |
| 2011 B493×QAL QAL | LG05 | 0 | PDS | MapViewer |
| 2002 B493×QAL Ver2 QAL | LG02 | 118 | PDS | MapViewer |
| 2011 FISH | CHR05 | 0 | PDS | MapViewer |
Synonyms:
- MK000036
- A8N14
Sequence Coordinates:
DCARv2_Chr5:204759..205371-
View location in JBrowse:
Sequence:
GAGTGGATAGGAATATTCCAATAAGTGGGAAAGGCAGTCCTCGCGTCGAG
TGAGGCCAAAAAGTTGCCAACTCCCCCTCTCCGCTCTTCTTCTTCTCCAC
CTCCTTCATTCAGTCTAATATTTTTTATATTTAATTTCGATGATATATTA
GCAAGCTGCAGTCCAGACACATAGCGACTTCATTTTGCTCCAACAATTCA
ATACAGACACACAGGAGCATCGAATTGCGGGTTGTGCTGTGAATTGCAAT
AAATAATAACATGTCTCATCATGTTTCTGCTGTCATCACAAACAATACCT
ATACTAATAATCTCAATCATCTACTTGACAAATTTCCCCTTTCATTTTCT
GCTACCCTCTCCACCACACTTAAACAACAACAACAACAACAACATCCTCT
TTCAAGATCAACCAAGTTTACGCGAACACGCCCCCGCTCCCACCCCCTTC
TCAAGGTGTCTTGTGTCGACTATCCCAGACCAGATATTGACAACACTCTC
CCCTTCTTAGAAGCTGCTTACTTATCTTCCTTCTTTTCCACTGCTTCCCG
CCCCAATAAACCATTAAATGTTGTCATTGCTGGTGCTGGTTTGGCTGGTT
TATCTACTGCAAAATATTTGGCAGATGCTGGTCACAAGCCCATATTGTTG
GAAGCGAGAGATGTTCTTGGCGGAAAGGTGGCTGCTTGGAAAGATGATGA
CGGAGATTGGTACGAGACTGGATTGCATATTTTCTTTGGGGCTTACCCAA
ATGTTCAGAACCTGTTTGGAGAGCTAGGAATTAACGACAGATTGCAGTGG
AAGGAGCATTCTATGATATTCGCTATGCCTAACAAGCCAGGGGAATTTAG
TCGATTTGATTTTCCGGAAGTTCTACCTGCACCTCTAAATGGAATATGGG
CTATCTTAAAGAACAATGAAATGCTAACATGGCCTGAGAAAGTCAAGTTT
GCGTTGGGTCTCTTGCCAGCAATAATTGGTGGACAAGCCTACGTGGAGGC
CCAAGATGGTTTAAGTGTCCAAGATTGGATGAGAAAGCAGGGCATACCTG
ATCGGGTTACAACTGAGGTTTTCGTTGCCATGTCAAAGTCGTTAAACTTC
ATCAATCCTGATGAACTCTCAATGCAATGTGTTTTGATAGCTTTGAACCG
ATTTCTTCAGGAGAAGCATGGTTCAAAGATGGCTTTCTTGGATGGAAGTC
CTCCAGAAAGACTTTGCATGCCTATAGTTGATCACATACAGTCATTGGGT
GGTGAAGTTCACCTCAATTCACGGGTACAGAAGATCTCTTTAAATAAAGA
TCAAACTGTTAAGAGTCTACTACTAACCAATGGGAAGGTTATTGAAGCAG
ACGCATATGTTATTGCTGCTCCAGTTGATATCTTTAAGTTGCTTGTGCCT
GAAGAGTGGAAAGAGATTCCATACTTCAAGAAGCTGGATAAATTAGTCGG
AGTTCCAGTAATCAACGTTCACATCTGGTTTGACAGGAAACTGAAGAACA
CTTATGATCATCTACTTTTCAGCAGAAGCTCTCTTCTTAGTGTGTACGCT
GACATGTCTGTTACTTGCAAGGAATATTACGACCCAAATAAATCCATGTT
GGAGTTGGTTTTTGCACCTGCAGAAGAATGGATTTCACGCAGTGACTCTG
ACATTATTGATGCAACAATGACTGAACTGGCCAGACTATTTCCTGACGAG
ATTGCTGCCGATCAAAGCAAAGCAAAAATACTGAAGTACCATGTTGTTAA
AACACCAAGGTCTGTTTATAAAACTATACCAGACTGTGAACCCTGCCGTC
CTTTGCAAAAATCTCCCATAGAAGGATTTTATTTAGCTGGTGATTACACA
AAACAGAGGTATTTGGCCTCAATGGAGGGTGCCGTCCTTTCAGGGAAGCT
TTGTGCTCAAGCTATATTACAGGATCACGAGTCACTGCTTTCCCGCAGGA
AGCAGGTGCTGGCTGAGGCAACTGCTGTCTAACTAGAGCAATAAAAGGTG
ATATGAGCTCTCAACAATCAGTAACATGTTGAACTGAGTCCAAGTGATTT
CATCAATTTGCACCAAATATATATCGAAGTAGTAAGAGGAAGAAAAAGTT
CAGCATAATTGAAAGGAAGAAACATGTTTTTTTTGTATGTGATATTTTAT
CAAAGCGTTTGCTAGTTAATACCAAAGTTAAACACAGAAAAATAGTCTTT
GTTGCC
Sequences:
>MK000036_PDS ID=MK000036_PDS; Name=MK000036 PDS; organism=Daucus carota; type=genetic_marker
GAGTGGATAGGAATATTCCAATAAGTGGGAAAGGCAGTCCTCGCGTCGAG
TGAGGCCAAAAAGTTGCCAACTCCCCCTCTCCGCTCTTCTTCTTCTCCAC
CTCCTTCATTCAGTCTAATATTTTTTATATTTAATTTCGATGATATATTA
GCAAGCTGCAGTCCAGACACATAGCGACTTCATTTTGCTCCAACAATTCA
ATACAGACACACAGGAGCATCGAATTGCGGGTTGTGCTGTGAATTGCAAT
AAATAATAACATGTCTCATCATGTTTCTGCTGTCATCACAAACAATACCT
ATACTAATAATCTCAATCATCTACTTGACAAATTTCCCCTTTCATTTTCT
GCTACCCTCTCCACCACACTTAAACAACAACAACAACAACAACATCCTCT
TTCAAGATCAACCAAGTTTACGCGAACACGCCCCCGCTCCCACCCCCTTC
TCAAGGTGTCTTGTGTCGACTATCCCAGACCAGATATTGACAACACTCTC
CCCTTCTTAGAAGCTGCTTACTTATCTTCCTTCTTTTCCACTGCTTCCCG
CCCCAATAAACCATTAAATGTTGTCATTGCTGGTGCTGGTTTGGCTGGTT
TATCTACTGCAAAATATTTGGCAGATGCTGGTCACAAGCCCATATTGTTG
GAAGCGAGAGATGTTCTTGGCGGAAAGGTGGCTGCTTGGAAAGATGATGA
CGGAGATTGGTACGAGACTGGATTGCATATTTTCTTTGGGGCTTACCCAA
ATGTTCAGAACCTGTTTGGAGAGCTAGGAATTAACGACAGATTGCAGTGG
AAGGAGCATTCTATGATATTCGCTATGCCTAACAAGCCAGGGGAATTTAG
TCGATTTGATTTTCCGGAAGTTCTACCTGCACCTCTAAATGGAATATGGG
CTATCTTAAAGAACAATGAAATGCTAACATGGCCTGAGAAAGTCAAGTTT
GCGTTGGGTCTCTTGCCAGCAATAATTGGTGGACAAGCCTACGTGGAGGC
CCAAGATGGTTTAAGTGTCCAAGATTGGATGAGAAAGCAGGGCATACCTG
ATCGGGTTACAACTGAGGTTTTCGTTGCCATGTCAAAGTCGTTAAACTTC
ATCAATCCTGATGAACTCTCAATGCAATGTGTTTTGATAGCTTTGAACCG
ATTTCTTCAGGAGAAGCATGGTTCAAAGATGGCTTTCTTGGATGGAAGTC
CTCCAGAAAGACTTTGCATGCCTATAGTTGATCACATACAGTCATTGGGT
GGTGAAGTTCACCTCAATTCACGGGTACAGAAGATCTCTTTAAATAAAGA
TCAAACTGTTAAGAGTCTACTACTAACCAATGGGAAGGTTATTGAAGCAG
ACGCATATGTTATTGCTGCTCCAGTTGATATCTTTAAGTTGCTTGTGCCT
GAAGAGTGGAAAGAGATTCCATACTTCAAGAAGCTGGATAAATTAGTCGG
AGTTCCAGTAATCAACGTTCACATCTGGTTTGACAGGAAACTGAAGAACA
CTTATGATCATCTACTTTTCAGCAGAAGCTCTCTTCTTAGTGTGTACGCT
GACATGTCTGTTACTTGCAAGGAATATTACGACCCAAATAAATCCATGTT
GGAGTTGGTTTTTGCACCTGCAGAAGAATGGATTTCACGCAGTGACTCTG
ACATTATTGATGCAACAATGACTGAACTGGCCAGACTATTTCCTGACGAG
ATTGCTGCCGATCAAAGCAAAGCAAAAATACTGAAGTACCATGTTGTTAA
AACACCAAGGTCTGTTTATAAAACTATACCAGACTGTGAACCCTGCCGTC
CTTTGCAAAAATCTCCCATAGAAGGATTTTATTTAGCTGGTGATTACACA
AAACAGAGGTATTTGGCCTCAATGGAGGGTGCCGTCCTTTCAGGGAAGCT
TTGTGCTCAAGCTATATTACAGGATCACGAGTCACTGCTTTCCCGCAGGA
AGCAGGTGCTGGCTGAGGCAACTGCTGTCTAACTAGAGCAATAAAAGGTG
ATATGAGCTCTCAACAATCAGTAACATGTTGAACTGAGTCCAAGTGATTT
CATCAATTTGCACCAAATATATATCGAAGTAGTAAGAGGAAGAAAAAGTT
CAGCATAATTGAAAGGAAGAAACATGTTTTTTTTGTATGTGATATTTTAT
CAAAGCGTTTGCTAGTTAATACCAAAGTTAAACACAGAAAAATAGTCTTT
GTTGCC
This is the primary representative sequence for this feature.
Sequence Length:
2206