Resource Type:
Genetic Marker
Name:
MK000045 CHXE
Identifier:
MK000045_CHXE
Organism:
Marker Type:
STS-Sanger
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Brian James Just. Genetic mapping of carotenoid pathway structural genes and major gene QTLs for caroteniod accumulation in wild and domesticated carrot (Daucus Carota L.). Ph.D. Thesis. 2004. University of Wisconsin-Madison
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000045 CHXE, is adjacent to primer, CHXE-5'UTRendF. |
| The genetic_marker, MK000045 CHXE, is adjacent to primer, CHXE-5'CDSendR. |
| The genetic_marker, MK000045 CHXE, is adjacent to gene, DCAR_017658. |
| The genetic_marker, MK000045 CHXE, is located in gene, LOC108220021. |
| The marker_locus, CHXE, is an instance of genetic_marker, MK000045 CHXE. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2004 BJ-Thesis-Fig4.5 | LG01 | 15 | CHXE | MapViewer |
| 2011 SS1061 | 1061-5 | 22.593 | CHXE | MapViewer |
| 2011 FISH | CHR05 | 9.373 | CHXE | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG02 | 94.2 | CHXE | MapViewer |
| 2011 FISH | CHR05 | 10.657 | CHXE | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG02 | 57 | CHXE | MapViewer |
| 2002 B493×QAL Ver2 QAL | LG02 | 68.7 | CHXE | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG02 | 64.6 | CHXE | MapViewer |
| 2011 SS1061QTL | 1061QTL-2 | 24.75 | CHXE | MapViewer |
| 2011 B493×QAL QAL | LG05 | 72.4 | CHXE | MapViewer |
| 2011 B493×QAL B493 | LG05 | 40 | CHXE | MapViewer |
Synonyms:
- MK000045
- A6F01
Sequence Coordinates:
DCARv2_Chr5:22110520..22110916+
View location in JBrowse:
Sequence:
GAAAATCAACAAAAAGTTTGAGTTACCAAACTCCCAAACATGCCTTACCA
TTCTATCTCATCTCTCTCGCTCCTCCCCATTCCTATCCGCCAAAACTTGT
CCAAACACCACCCACCATTTCATCAACCACCTCACTCACTCCCACTCTCC
ATCAAATCTTCACTCGACAACAAGCCACCCAAGTCCAACCAAGGCTCATG
GGTCAGCCCAGACTGGCTCACTTCTCTTACCAAGTCTATCACTCTCAGCA
AAGATGATTCCAACATACCCATTGCCAGCGCAAAGCTTGAAGACGTGTCT
GAGCTTCTTGGGGGTGCTCTTTTCTTGCCATTGTTTAAGTGGATGAATAT
GTATGGGCCCATTTATAGGCTTGCTGCTGGGCCGAGAGATTTTGTGGTGG
TCAGTGATCCAGCTATTGCTAAACATGTTTTGAGGAATTATGGCAAGTAT
GCTAAAGGTCTTGTTGCTGAGGTTTCTGAGTTCTTGTTTGGCTCTGGCTT
TGCCATTGCTGAAGGCCCTCTTTGGACGGCGAGACGCAGGGCTGTGGTTC
CTTCGCTTCACAAGAAGTATTTGTCAGTGATGGTTGACCGGGTGTTCTGC
AAATGTGCCGAACGACTGGTGGAAAAGCTTGAAATTAGCGCATTAAATGG
CTCTGCTGTGAATATGGAGGAACAGTTTTCTCAGTTAACTCTGGATGTTA
TTGGTCTATCAGTGTTCAACTACAATTTTGATTCGCTTAATGCTGATAGT
CCTGTTATTGAAGCAGTTTACACTGCTTTAAAAGAAGCAGAGGCTCGATC
AACTGACATATTACCATATTGGAAGATTGAAGCATTATGTAAGATTATCC
CGAGACAAGTAAAAGCTGAAAAAGCTGTTACAGTGATTAGAACAACAGTC
GAAGAACTGATCGAGAAGTGCAAGAAGATTGTGGACACTGAAGGTGAAAG
GATTAGCGAGGAGGAGTATGTAAATGAAGCCGATCCTAGCATTCTACGGT
TCCTGCTAGCCAGCAGAGAAGAGGTCTCAAGCACACAGCTGCGAGATGAT
CTTTTATCGATGTTAGTTGCTGGCCACGAGACCACCGGCTCTGTGTTGAC
ATGGACATCATATCTTTTAAGTAAGAACCCTTCTTCTTTAGTAAAAGCCC
AAGCAGAAGTTGATAGAGTTTTAGAAGGAAGGCCTCCTACATATGATGAC
ATTAAGAATCTCAAGTACCTGACACGCTGCATAAATGAGTCGATGCGTCT
TTATCCACATCCTCCTGTTCTGATTCGAAGAGCTGAAGTTGCTGATGAGC
TTCCTGGGAGCTACAAGGTTAATCCTGGGCAAGACATAATGATTTCTGTA
TATAATATCCATCATTCTTCAAAGGTCTGGGACAGGGCAGAAGAGTTTAT
TCCGGAAAGATTTGACTTGGATGGCCCGGTGCCAAATGAATCAAATACTG
ATTATAGATTTATCCCATTCAGCGGAGGTCCTCGCAAATGTGTAGGTGAT
CAGTTTGCTTTACTGGAAGCAATTGTGTCGCTAGCTATATTCCTGCAGCA
CTTGAGCTTTGAGTTGATTCCAGATCAGGTTATCAACATGACAACAGGAG
CCACTATTCACACAACGAATGGATTGTACATGAAAGTGTCCAAGCGGCAA
ATCAAATCAGCAGCTGTTTCCTCAATATCTAGGTAAACTTTATAGTTCTG
TACATAAAAGTGGCAATATGTTGTATAGAATGTGGGATGATGAAGGTGAT
CCACTGAGGCTTCGACTCTATTGATTTATTAACCGAGAAAGAACATTCAT
TTA
Sequences:
>MK000045_CHXE ID=MK000045_CHXE; Name=MK000045 CHXE; organism=Daucus carota; type=genetic_marker
GAAAATCAACAAAAAGTTTGAGTTACCAAACTCCCAAACATGCCTTACCA
TTCTATCTCATCTCTCTCGCTCCTCCCCATTCCTATCCGCCAAAACTTGT
CCAAACACCACCCACCATTTCATCAACCACCTCACTCACTCCCACTCTCC
ATCAAATCTTCACTCGACAACAAGCCACCCAAGTCCAACCAAGGCTCATG
GGTCAGCCCAGACTGGCTCACTTCTCTTACCAAGTCTATCACTCTCAGCA
AAGATGATTCCAACATACCCATTGCCAGCGCAAAGCTTGAAGACGTGTCT
GAGCTTCTTGGGGGTGCTCTTTTCTTGCCATTGTTTAAGTGGATGAATAT
GTATGGGCCCATTTATAGGCTTGCTGCTGGGCCGAGAGATTTTGTGGTGG
TCAGTGATCCAGCTATTGCTAAACATGTTTTGAGGAATTATGGCAAGTAT
GCTAAAGGTCTTGTTGCTGAGGTTTCTGAGTTCTTGTTTGGCTCTGGCTT
TGCCATTGCTGAAGGCCCTCTTTGGACGGCGAGACGCAGGGCTGTGGTTC
CTTCGCTTCACAAGAAGTATTTGTCAGTGATGGTTGACCGGGTGTTCTGC
AAATGTGCCGAACGACTGGTGGAAAAGCTTGAAATTAGCGCATTAAATGG
CTCTGCTGTGAATATGGAGGAACAGTTTTCTCAGTTAACTCTGGATGTTA
TTGGTCTATCAGTGTTCAACTACAATTTTGATTCGCTTAATGCTGATAGT
CCTGTTATTGAAGCAGTTTACACTGCTTTAAAAGAAGCAGAGGCTCGATC
AACTGACATATTACCATATTGGAAGATTGAAGCATTATGTAAGATTATCC
CGAGACAAGTAAAAGCTGAAAAAGCTGTTACAGTGATTAGAACAACAGTC
GAAGAACTGATCGAGAAGTGCAAGAAGATTGTGGACACTGAAGGTGAAAG
GATTAGCGAGGAGGAGTATGTAAATGAAGCCGATCCTAGCATTCTACGGT
TCCTGCTAGCCAGCAGAGAAGAGGTCTCAAGCACACAGCTGCGAGATGAT
CTTTTATCGATGTTAGTTGCTGGCCACGAGACCACCGGCTCTGTGTTGAC
ATGGACATCATATCTTTTAAGTAAGAACCCTTCTTCTTTAGTAAAAGCCC
AAGCAGAAGTTGATAGAGTTTTAGAAGGAAGGCCTCCTACATATGATGAC
ATTAAGAATCTCAAGTACCTGACACGCTGCATAAATGAGTCGATGCGTCT
TTATCCACATCCTCCTGTTCTGATTCGAAGAGCTGAAGTTGCTGATGAGC
TTCCTGGGAGCTACAAGGTTAATCCTGGGCAAGACATAATGATTTCTGTA
TATAATATCCATCATTCTTCAAAGGTCTGGGACAGGGCAGAAGAGTTTAT
TCCGGAAAGATTTGACTTGGATGGCCCGGTGCCAAATGAATCAAATACTG
ATTATAGATTTATCCCATTCAGCGGAGGTCCTCGCAAATGTGTAGGTGAT
CAGTTTGCTTTACTGGAAGCAATTGTGTCGCTAGCTATATTCCTGCAGCA
CTTGAGCTTTGAGTTGATTCCAGATCAGGTTATCAACATGACAACAGGAG
CCACTATTCACACAACGAATGGATTGTACATGAAAGTGTCCAAGCGGCAA
ATCAAATCAGCAGCTGTTTCCTCAATATCTAGGTAAACTTTATAGTTCTG
TACATAAAAGTGGCAATATGTTGTATAGAATGTGGGATGATGAAGGTGAT
CCACTGAGGCTTCGACTCTATTGATTTATTAACCGAGAAAGAACATTCAT
TTA
This is the primary representative sequence for this feature.
Sequence Length:
1803