Resource Type:
Genetic Marker
Name:
MK000046 ZEP
Identifier:
MK000046_ZEP
Organism:
Marker Type:
CAPS
Publication:
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Brian James Just. Genetic mapping of carotenoid pathway structural genes and major gene QTLs for caroteniod accumulation in wild and domesticated carrot (Daucus Carota L.). Ph.D. Thesis. 2004. University of Wisconsin-Madison
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000046 ZEP, is adjacent to primer, ZEPdg1F. |
| The genetic_marker, MK000046 ZEP, is adjacent to primer, ZEPdg2R. |
| The genetic_marker, MK000046 ZEP, is located in gene, DCAR_025735. |
| The genetic_marker, MK000046 ZEP, is located in gene, LOC108196307. |
| The marker_locus, ZEP, is an instance of genetic_marker, MK000046 ZEP. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2007 B493×QAL Ver3 QAL | LG05 | 106.6 | ZEP | MapViewer |
| 2011 FISH | CHR07 | 16.16 | ZEP | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG05 | 57 | ZEP | MapViewer |
| 2011 FISH | CHR07 | 15.113 | ZEP | MapViewer |
| 2011 B493×QAL QAL | LG07 | 93.2 | ZEP | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG05 | 107.4 | ZEP | MapViewer |
| 2002 B493×QAL Ver2 QAL | LG05 | 92.7 | ZEP | MapViewer |
| 2011 B493×QAL B493 | LG07 | 97.5 | ZEP | MapViewer |
| 2004 BJ-Thesis-Fig4.6 | LG01 | 0 | ZEP | MapViewer |
Synonyms:
- MK000046
- C003E10
Sequence Coordinates:
DCARv2_Chr7:30089219..30089947-
View location in JBrowse:
Sequence:
AGGTGTGCAGAAAAATAGGAGACACGTGGCAACCAAATTTACACAATTGG
TGGAGGAGGACATTCACAAATTCTTGGCCATGGATTGGTGAACTACACTT
ATAATACACACTACCAAATCTATTGCAGCTTCATCAGTATCAAGAACCAA
TCAAGAAATAGAAAGAAATTTGAAGCTGGGTGTGTTTTGTAAGCATGGCT
TCAGCTGTGTTCTACACTTCAATGAACTCATCACCTGCACTTTTTTCAAG
AACCCATTTCCCAAATTCAATCTCAAAGGACTTTTCTGATGAATTCTTGA
ATACCCATCAAGTTAATTATTACTTGCCAGCAAGAAAGATTGGATCTTTG
AAGAGGGTTGCAAGTAAAGTTAGAGCTGCTGTGACTGATGCGCCTGTGGT
GAGTCAAAGTGGTGGGGAGAATTTGAGAGAGGGGAAGAAGAAGTTGAAGA
TTCTGGTGGCTGGAGGGGGGATTGGGGGCTTGGTTTTCGCCTTGGCGGCG
AGGAGGAAGGGGTTTGAAGTGGTGGTGTTTGAGAGGGATTTGACTGCTAT
TAGAGGTGAGGGGCAGTATAGGGGACCTATTCAGATACAAAGTAATGCTT
TGGCTGCTTTGGAAGCTATTGATTGGGATGTTGCTGATGAGGTTATGAAA
GCTGGTTGTATTACTGGTGACAGAATTAATGGATTGGTTGATGGTGTTTC
TGGCAATTGGTACTGCAAGTTTGATACGTTCACACCTGCAGCAGAACGGG
GCCTTCCAGTCACAAGAGTTGTAAGTCGCATGACGCTGCAAAAAATTCTG
GCCACCGCTGTTGGGGATGAAATTATATGTAATGGTAGTAATGTAGTGGA
CTTTGAGGATGATGGAAAGAAGGTTACTGTTATTCTGGAGGATGGACAGC
GCTGTGAAGGGGATCTTTTGGTTGGCGCTGATGGAATATGGTCAAAGGTA
CGGAGAAATTTGTTTGGATACACAGAGCCTACATATTCAGGTTACACTTG
TTATACAGGGATTGCAGATTTTGTGCCTGCGGATATTGATACGGTTGGGT
ACCGAGTATTTCTGGGCCACAAACAATACTTCGTTTCTTCAGATGTGGGT
GGGGGAAAGATGCAGTGGTATGCATTCTATAATGAACCTGCTGGTGGCAA
AGATAAAGAAAATGGTAAAAAGGAAAGGCTCCTTCAAATATTTGGTGGTT
GGTGCGATAATGTAATAGATTTGTTAATGGCTACCGACGAAGAAGCAATT
CTTCGTCGTGACATATATGACCGGGAACCAACTTTTAATTGGGGAAAGGG
TCGTATAACCTTGCTTGGGGACTCGGTTCATGCTATGCAGCCAAATCTAG
GTCAAGGGGGGTGCATGGCCATTGAGGACAGCTATCAACTAGCAATGGAG
CTTGATAAAGCATACAACCGAAGTGCTGAATCGGGAAATCCTATCGATAT
CGAATCTTCACTTAGGAGCTATGAAAGTTCTAGGAAAATACGTGTCTCGG
TTATTCATGGACTTGCTAGAATGGCTGCAATCATGGCCTCAACATATAAA
GCATATTTGGGTGTAGGACTTGGTCCATTGTCGTTCTTGACCAAGTTGAG
AATACCACATCCAGGGAGAGTTGGGGGAAGATTTTTTATTGACATCGGGA
TGCCATTGATGTTAAGTTGGGTACTAGGTGGCAATGGATCAAACCTTGAA
GGGAGACCATTACAGTGCAGGCTTTCTGACAGAGCAAACAGCGATTTGAA
AAGGTGGTTTGAAGATGACGATGCATTGGAGCGTGCTACAAAAGGAGAGT
GGGTTCTATTTCCTGTCGGGAATACATCTGCTTCTTCAGAAGCAATATTT
CTCAGCAAGGATGAAGGAAAACCTTGTATAGTCGGGAGCGTATTGCACCC
AAACATTCCAGGAACATCAATTGCCATACCTTCACCCCAGGTTTCCAGCT
TGCATGCTAAAATAACTTGTAAGAATGGTGCCTTTTCTGTTACTGATTTG
CGAAGTGAACATGGTACCTACTTAAGCGATAATGAAGGCAGACGGTATCG
GATTCCCCCTAATTTTCCTACTCGCTTTCATCCATCAGATATTATCGGAT
TTGGTTCAGATGAAAAGGTAGCTTTTCGGGTAAAGGTGATGAAGTTTCCG
TCCCAGGTTGCAGAGAACACAGAAGGAAGTGGAGCTCTCCAAGCAGTATG
AGATTTTTCGACTAGGCTTTAGATATTGCAAACACCAAATTGTATAGCAT
TCTCCACGACGCAGCGGATGCACAAAGCTGCTGTTTTGTACAATGTAGGA
CCAAAGGTATAGCATGCATGAAAGGACAGGATCCATAGCTTTGTTTGTGT
ATTGGCATTCCCATGTTTTGCTTTGATGCAGTGGGTTATACTTATACGAA
TTTATTTTTCAATGCAAACAAAGTTTGATGT
Sequences:
>MK000046_ZEP ID=MK000046_ZEP; Name=MK000046 ZEP; organism=Daucus carota; type=genetic_marker
AGGTGTGCAGAAAAATAGGAGACACGTGGCAACCAAATTTACACAATTGG
TGGAGGAGGACATTCACAAATTCTTGGCCATGGATTGGTGAACTACACTT
ATAATACACACTACCAAATCTATTGCAGCTTCATCAGTATCAAGAACCAA
TCAAGAAATAGAAAGAAATTTGAAGCTGGGTGTGTTTTGTAAGCATGGCT
TCAGCTGTGTTCTACACTTCAATGAACTCATCACCTGCACTTTTTTCAAG
AACCCATTTCCCAAATTCAATCTCAAAGGACTTTTCTGATGAATTCTTGA
ATACCCATCAAGTTAATTATTACTTGCCAGCAAGAAAGATTGGATCTTTG
AAGAGGGTTGCAAGTAAAGTTAGAGCTGCTGTGACTGATGCGCCTGTGGT
GAGTCAAAGTGGTGGGGAGAATTTGAGAGAGGGGAAGAAGAAGTTGAAGA
TTCTGGTGGCTGGAGGGGGGATTGGGGGCTTGGTTTTCGCCTTGGCGGCG
AGGAGGAAGGGGTTTGAAGTGGTGGTGTTTGAGAGGGATTTGACTGCTAT
TAGAGGTGAGGGGCAGTATAGGGGACCTATTCAGATACAAAGTAATGCTT
TGGCTGCTTTGGAAGCTATTGATTGGGATGTTGCTGATGAGGTTATGAAA
GCTGGTTGTATTACTGGTGACAGAATTAATGGATTGGTTGATGGTGTTTC
TGGCAATTGGTACTGCAAGTTTGATACGTTCACACCTGCAGCAGAACGGG
GCCTTCCAGTCACAAGAGTTGTAAGTCGCATGACGCTGCAAAAAATTCTG
GCCACCGCTGTTGGGGATGAAATTATATGTAATGGTAGTAATGTAGTGGA
CTTTGAGGATGATGGAAAGAAGGTTACTGTTATTCTGGAGGATGGACAGC
GCTGTGAAGGGGATCTTTTGGTTGGCGCTGATGGAATATGGTCAAAGGTA
CGGAGAAATTTGTTTGGATACACAGAGCCTACATATTCAGGTTACACTTG
TTATACAGGGATTGCAGATTTTGTGCCTGCGGATATTGATACGGTTGGGT
ACCGAGTATTTCTGGGCCACAAACAATACTTCGTTTCTTCAGATGTGGGT
GGGGGAAAGATGCAGTGGTATGCATTCTATAATGAACCTGCTGGTGGCAA
AGATAAAGAAAATGGTAAAAAGGAAAGGCTCCTTCAAATATTTGGTGGTT
GGTGCGATAATGTAATAGATTTGTTAATGGCTACCGACGAAGAAGCAATT
CTTCGTCGTGACATATATGACCGGGAACCAACTTTTAATTGGGGAAAGGG
TCGTATAACCTTGCTTGGGGACTCGGTTCATGCTATGCAGCCAAATCTAG
GTCAAGGGGGGTGCATGGCCATTGAGGACAGCTATCAACTAGCAATGGAG
CTTGATAAAGCATACAACCGAAGTGCTGAATCGGGAAATCCTATCGATAT
CGAATCTTCACTTAGGAGCTATGAAAGTTCTAGGAAAATACGTGTCTCGG
TTATTCATGGACTTGCTAGAATGGCTGCAATCATGGCCTCAACATATAAA
GCATATTTGGGTGTAGGACTTGGTCCATTGTCGTTCTTGACCAAGTTGAG
AATACCACATCCAGGGAGAGTTGGGGGAAGATTTTTTATTGACATCGGGA
TGCCATTGATGTTAAGTTGGGTACTAGGTGGCAATGGATCAAACCTTGAA
GGGAGACCATTACAGTGCAGGCTTTCTGACAGAGCAAACAGCGATTTGAA
AAGGTGGTTTGAAGATGACGATGCATTGGAGCGTGCTACAAAAGGAGAGT
GGGTTCTATTTCCTGTCGGGAATACATCTGCTTCTTCAGAAGCAATATTT
CTCAGCAAGGATGAAGGAAAACCTTGTATAGTCGGGAGCGTATTGCACCC
AAACATTCCAGGAACATCAATTGCCATACCTTCACCCCAGGTTTCCAGCT
TGCATGCTAAAATAACTTGTAAGAATGGTGCCTTTTCTGTTACTGATTTG
CGAAGTGAACATGGTACCTACTTAAGCGATAATGAAGGCAGACGGTATCG
GATTCCCCCTAATTTTCCTACTCGCTTTCATCCATCAGATATTATCGGAT
TTGGTTCAGATGAAAAGGTAGCTTTTCGGGTAAAGGTGATGAAGTTTCCG
TCCCAGGTTGCAGAGAACACAGAAGGAAGTGGAGCTCTCCAAGCAGTATG
AGATTTTTCGACTAGGCTTTAGATATTGCAAACACCAAATTGTATAGCAT
TCTCCACGACGCAGCGGATGCACAAAGCTGCTGTTTTGTACAATGTAGGA
CCAAAGGTATAGCATGCATGAAAGGACAGGATCCATAGCTTTGTTTGTGT
ATTGGCATTCCCATGTTTTGCTTTGATGCAGTGGGTTATACTTATACGAA
TTTATTTTTCAATGCAAACAAAGTTTGATGT
This is the primary representative sequence for this feature.
Sequence Length:
2431