Resource Type:
Genetic Marker
Name:
MK000002 Y2mark
Identifier:
MK000002_Y2mark
Organism:
Marker Type:
STS
Publication:
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Brian James Just. Genetic mapping of carotenoid pathway structural genes and major gene QTLs for caroteniod accumulation in wild and domesticated carrot (Daucus Carota L.). Ph.D. Thesis. 2004. University of Wisconsin-Madison
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000002 Y2mark, is adjacent to primer, DJB1tot5a. |
| The genetic_marker, MK000002 Y2mark, is adjacent to primer, DJB1tot5b. |
| The genetic_marker, MK000002 Y2mark, is adjacent to gene, DCAR_026326. |
| The genetic_marker, MK000002 Y2mark, is located in gene, LOC108196601. |
| The marker_locus, Y2mark, is an instance of genetic_marker, MK000002 Y2mark. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2002 B493×QAL Ver2 B493 | LG05 | 94.8 | Y2mark | MapViewer |
| 2016 70349 NG bin map | Chr7 | 1.324 | Y2mark | MapViewer |
| 2014 70349 | Chromosome_7 | 1.324 | Y2mark | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG05 | 122.4 | Y2mark | MapViewer |
| 2011 B493×QAL QAL | LG07 | 113.3 | Y2mark | MapViewer |
| 2002 B493×QAL Ver2 QAL | LG05 | 109 | Y2mark | MapViewer |
| 2011 B493×QAL B493 | LG07 | 121.5 | Y2mark | MapViewer |
| 2016 Integ NG full map | CH7 | 56.102 | Y2mark | MapViewer |
| 2011 FISH | CHR07 | 19.303 | Y2mark | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG05 | 157.5 | Y2mark | MapViewer |
| 2011 FISH | CHR07 | 18.721 | Y2mark | MapViewer |
| 2004 BJ-Thesis-Fig4.6 | LG01 | 10.2 | Y2mark | MapViewer |
| 2016 Integ NG bin map | CH7 | 57.196 | Y2mark | MapViewer |
| 2014 yel×cola | LG7 | 61.8 | Y2mark | MapViewer |
| 2016 70349 NG full map | Chr7 | 1.324 | Y2mark | MapViewer |
Synonyms:
- MK000002
- C004J17
Sequence Coordinates:
DCARv2_Chr7:35388404..35388712-
View location in JBrowse:
Sequence:
TGGATCATCAGAACTCAACTCATTGGAATGATGAGAGTAATTTATAAGAA
TTTACCCCCTGCATTTTTACATGAATCTGTATTAAGCATTCTACTAACTG
ATCATAAATATATATATAGGAGGAAGATCTACAGGGCTTGGTATCACGAA
CTCCATTCGGCCGCCCAGGAGAAGTTAACGAGGTTTCTTCACTAGTGACA
TTTCTTTGCCTTCCTGCAGCTTCATATATCACTGGCCAGATTATTTGCGT
TGATGGAGGCCATACAGTCTGCGGTTATTGATGGTTTATGTTCTTCCTAT
ACGACTTTA
Sequences:
>MK000002_Y2mark ID=MK000002_Y2mark; Name=MK000002 Y2mark; organism=Daucus carota; type=genetic_marker
TGGATCATCAGAACTCAACTCATTGGAATGATGAGAGTAATTTATAAGAA
TTTACCCCCTGCATTTTTACATGAATCTGTATTAAGCATTCTACTAACTG
ATCATAAATATATATATAGGAGGAAGATCTACAGGGCTTGGTATCACGAA
CTCCATTCGGCCGCCCAGGAGAAGTTAACGAGGTTTCTTCACTAGTGACA
TTTCTTTGCCTTCCTGCAGCTTCATATATCACTGGCCAGATTATTTGCGT
TGATGGAGGCCATACAGTCTGCGGTTATTGATGGTTTATGTTCTTCCTAT
ACGACTTTA
This is the primary representative sequence for this feature.
Sequence Length:
309