Resource Type:
Genetic Marker
Name:
MK000041 LCYE
Identifier:
MK000041_LCYE
Organism:
Marker Type:
STS
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000041 LCYE, is adjacent to primer, LCY-Ins-F. |
| The genetic_marker, MK000041 LCYE, is adjacent to primer, LCY-Ins-R. |
| The genetic_marker, MK000041 LCYE, is located in gene, DCAR_028276. |
| The genetic_marker, MK000041 LCYE, is located in gene, LOC108197060. |
| The marker_locus, LCYE, is an instance of genetic_marker, MK000041 LCYE. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2007 B493×QAL Ver3 B493 | LG09 | 90.6 | LCYE | MapViewer |
| 2011 B493×QAL QAL | LG08 | 52.7 | LCYE | MapViewer |
| 2002 B493×QAL Ver2 QAL | LG09 | 61.8 | LCYE | MapViewer |
| 2011 B493×QAL B493 | LG08 | 83.7 | LCYE | MapViewer |
| 2011 FISH | CHR08 | 4.224 | LCYE | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG09 | 65.5 | LCYE | MapViewer |
| 2011 SS1061 | 1061-8 | 16.539 | LCYE | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG09 | 76.6 | LCYE | MapViewer |
| 2011 FISH | CHR08 | 5.775 | LCYE | MapViewer |
| 2011 SS1061QTL | 1061QTL-4 | 6.54 | LCYE | MapViewer |
Synonyms:
- MK000041
- C009K15
Sequence Coordinates:
DCARv2_Chr8:9729580..9729803-
View location in JBrowse:
Sequence:
GACTTCACATTTTCCCAGAAACTTCTACACAATCTCCACCGTAATGCCAC
CGTAACTAAAACACACATTTAAATTCTCGCCGGAAACAATGGAGTCGTAC
TGCATAGGTGGCCGGAACTTCACAACAATGGCGGTGTTCTCGACGTGTCC
GACGTGGAGGCGACCGAGGAGGAAGAGGCTGAGAAGGAGTAATGTGAAGG
TGAGTTGTGGGAGGAAGAGTGAGATGAGGTGTGTGAAGGAGGTTATTAGT
TGTGTTGCTGTTGTTGAAGATGAGGAGTTCGCTGATGAGGAGGATTTTGT
TAAAGCCGGTGGCTCGGAGCTTTTGTTTGTTCAAATGCAGCGGAATAAGG
CTATGGATACTCAGTCTAAACTTGCTCATAAATTGCCGCGAATACCTATT
AGAGATAGTGTATTGGATTTGGTGGTTATTGGTTGTGGTCCTGCTGGTCT
TGCTCTTGCTGCAGAATCAGCTAAGCTTGGTCTGAGAGTTGGGCTTATTG
GGCCTGATCTTCCCTTTACTAATAATTATGGTGTATGGGAGGATGAATTT
ATAGATCTTGGACTTGAAGGGTGTATTGAGCATGTTTGGCGGGATACTAT
TGTATATCTTGATGATGGTGATCCTATTATGATTGGCCGTGCTTACGGAA
GAGTTAGTCGCCATTTGCTTCATGAAGAATTGCTTAAAAGGTGTGTCGAG
TCAGGTGTTTCGTATCTTAGCTCAAAAGTTGAAAAGATTATTGAAGCTGG
AGATGGCCACAGCCTGGTTGAGTGTGAAAATAATATTGTCATTCCATGCA
GGCTTGCTACTGTTGCATCTGGAGCAGCTTCTGGGAAACTTTTGCAGTAT
GAGGTTGGGGGTCCCAGAGTTTCTGTCCAAACAGCTTATGGTGTCGAGGT
TGAGGTGGAAAACAATCCATATGATCCCAGTCTAATGGTTTTCATGGATT
ACAGAGATTATACCAAACAAAAAGTTCCAGGCATGGAGGCAGAATATCCA
ACATTTCTTTATGTGATGCCCATGTCCCCAACAAGGATTTTCTTTGAGGA
GACATGTTTGGCTTCAAAAGATGCGATGCCATTCGATCTACTGAAGAAAA
AACTCATGTCAAGATTACAGACGATGGGAATTCGAGTTGCCAAGACATAT
GAAGAGGAATGGTCTTATATACCTGTTGGGGGATCTTTACCTAATACTGA
GCAAAAAAACCTTGCATTTGGTGCAGCTGCAAGCATGGTGCATCCAGCCA
CTGGCTATTCAGTTGTCAGATCATTGTCAGAGGCCCCAAATTACGCTGCT
GTTATTGCAAACATCTTGAAAAGTAGTCAAATGAACGGGATGATTAATTA
TGGAAGATATACAGAGAACATCTCAATGCAAGCTTGGAAGACCCTGTGGC
CTCAAGAAAGGAAACGCCAGAGAGCATTCTTTCTATTTGGACTAGCACTC
ATTTTACAGCTGGATATCGACGGCATAAGAACATTCTTCCAAACTTTTTT
CCGCTTACCCACCTGGATGTGGCAGGGATTTCTTGGTTCTTCTCTATCCT
CAGTCGACCTTGTACTATTTGCCTTTTATATGTTTATCATAGCCCCACAC
CACTTGAGAATGTCCCTTGTAAGACATCTCCTTTCTGATCCAACAGGAGC
TACAATGGTAAAAACATATTTAACGGCCTAGGAACCCTAATTTGTATATC
TTAGCCCAAATGCTCGGTTCAGAAAGTTATGTAAATAACTCTTTTCATAA
TATATATAATTATCATTTTTGATCTATCC
Sequences:
>MK000041_LCYE ID=MK000041_LCYE; Name=MK000041 LCYE; organism=Daucus carota; type=genetic_marker
GACTTCACATTTTCCCAGAAACTTCTACACAATCTCCACCGTAATGCCAC
CGTAACTAAAACACACATTTAAATTCTCGCCGGAAACAATGGAGTCGTAC
TGCATAGGTGGCCGGAACTTCACAACAATGGCGGTGTTCTCGACGTGTCC
GACGTGGAGGCGACCGAGGAGGAAGAGGCTGAGAAGGAGTAATGTGAAGG
TGAGTTGTGGGAGGAAGAGTGAGATGAGGTGTGTGAAGGAGGTTATTAGT
TGTGTTGCTGTTGTTGAAGATGAGGAGTTCGCTGATGAGGAGGATTTTGT
TAAAGCCGGTGGCTCGGAGCTTTTGTTTGTTCAAATGCAGCGGAATAAGG
CTATGGATACTCAGTCTAAACTTGCTCATAAATTGCCGCGAATACCTATT
AGAGATAGTGTATTGGATTTGGTGGTTATTGGTTGTGGTCCTGCTGGTCT
TGCTCTTGCTGCAGAATCAGCTAAGCTTGGTCTGAGAGTTGGGCTTATTG
GGCCTGATCTTCCCTTTACTAATAATTATGGTGTATGGGAGGATGAATTT
ATAGATCTTGGACTTGAAGGGTGTATTGAGCATGTTTGGCGGGATACTAT
TGTATATCTTGATGATGGTGATCCTATTATGATTGGCCGTGCTTACGGAA
GAGTTAGTCGCCATTTGCTTCATGAAGAATTGCTTAAAAGGTGTGTCGAG
TCAGGTGTTTCGTATCTTAGCTCAAAAGTTGAAAAGATTATTGAAGCTGG
AGATGGCCACAGCCTGGTTGAGTGTGAAAATAATATTGTCATTCCATGCA
GGCTTGCTACTGTTGCATCTGGAGCAGCTTCTGGGAAACTTTTGCAGTAT
GAGGTTGGGGGTCCCAGAGTTTCTGTCCAAACAGCTTATGGTGTCGAGGT
TGAGGTGGAAAACAATCCATATGATCCCAGTCTAATGGTTTTCATGGATT
ACAGAGATTATACCAAACAAAAAGTTCCAGGCATGGAGGCAGAATATCCA
ACATTTCTTTATGTGATGCCCATGTCCCCAACAAGGATTTTCTTTGAGGA
GACATGTTTGGCTTCAAAAGATGCGATGCCATTCGATCTACTGAAGAAAA
AACTCATGTCAAGATTACAGACGATGGGAATTCGAGTTGCCAAGACATAT
GAAGAGGAATGGTCTTATATACCTGTTGGGGGATCTTTACCTAATACTGA
GCAAAAAAACCTTGCATTTGGTGCAGCTGCAAGCATGGTGCATCCAGCCA
CTGGCTATTCAGTTGTCAGATCATTGTCAGAGGCCCCAAATTACGCTGCT
GTTATTGCAAACATCTTGAAAAGTAGTCAAATGAACGGGATGATTAATTA
TGGAAGATATACAGAGAACATCTCAATGCAAGCTTGGAAGACCCTGTGGC
CTCAAGAAAGGAAACGCCAGAGAGCATTCTTTCTATTTGGACTAGCACTC
ATTTTACAGCTGGATATCGACGGCATAAGAACATTCTTCCAAACTTTTTT
CCGCTTACCCACCTGGATGTGGCAGGGATTTCTTGGTTCTTCTCTATCCT
CAGTCGACCTTGTACTATTTGCCTTTTATATGTTTATCATAGCCCCACAC
CACTTGAGAATGTCCCTTGTAAGACATCTCCTTTCTGATCCAACAGGAGC
TACAATGGTAAAAACATATTTAACGGCCTAGGAACCCTAATTTGTATATC
TTAGCCCAAATGCTCGGTTCAGAAAGTTATGTAAATAACTCTTTTCATAA
TATATATAATTATCATTTTTGATCTATCC
This is the primary representative sequence for this feature.
Sequence Length:
1779