Resource Type:
Genetic Marker
Name:
MK000055 SSR-W93
Identifier:
MK000055_SSR_W93
Organism:
Marker Type:
SSR
Publication:
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
- Carlos Antonio Fernandes Santos. Biometrical studies and quantitative trait loci associated with major products of the carotenoid pathway of carrot (Daucus carota L.). Ph.D. Thesis. 2001. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000055 SSR-W93, is adjacent to primer, N6 W93 microsat upper. |
| The genetic_marker, MK000055 SSR-W93, is adjacent to primer, N6 W93 microsat lower. |
| The genetic_marker, MK000055 SSR-W93, is located in gene, DCAR_029713. |
| The genetic_marker, MK000055 SSR-W93, is located in gene, LOC108201754. |
| The marker_locus, SSR-W93, is an instance of genetic_marker, MK000055 SSR-W93. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2001 B493×QAL Ver1 QAL | LG07 | 27.7 | SSR-W93 | MapViewer |
| 2001 B493×QAL Ver1 C+R | LG07 | 37.7 | SSR-W93 | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG07 | 75.4 | SSR-W93 | MapViewer |
| 2011 FISH | CHR09 | 5.797 | SSR-W93 | MapViewer |
| 2001 B493×QAL Ver1 B493 | LG07 | 38.6 | SSR-W93 | MapViewer |
| 2011 B493×QAL QAL | LG09 | 62.1 | SSR-W93 | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG07 | 71.6 | SSR-W93 | MapViewer |
| 2011 FISH | CHR09 | 4.65 | SSR-W93 | MapViewer |
| 2014 yel×cola | LG9 | 30.8 | SSR-W93 | MapViewer |
| 2011 B493×QAL B493 | LG09 | 63.8 | SSR-W93 | MapViewer |
Synonyms:
- MK000055
- C113N07
Sequence Coordinates:
DCARv2_Chr9:12189040..12189324+
View location in JBrowse:
Sequence:
GAATTCGCCCTTGAGACGCACATGTGCCACAGACACTTTAAAGATCTGTT
ACTATAATATGATGAGGCAACATTTAGAAATTGCAATGTGCAATTTCTGA
TTGTAATATAATATATGTGGTTACTTTCATTTTTTGATGTATGCCTTAAT
TTAAGAATCAACCTTTATTTACTGAGTTAGTGGTGTCGGATATATGAATT
TGGACATACACAGTGCACAAATAATAATATATTAATACTTAATTATCTGG
CAAGTTCTCAAACATGAAACATATTCCAGAGAGATATACTTGGACAGATG
TAGTAAGTATGTATATATATTTTAGTACATACCTATCTTTGCACTTTTTG
GCATCTTAATGACTTTCTAAATATAAGGGCTTCTGAAGCTCTTAAAAGAT
CGAGAGCTATCTAAGTACAATTTTTATAATAGGGCGTTTCTTGTTCTTAT
AATTCGTTTGAACTTGCAGGAAAGCAGGATTACCTGTTGGTTACAAGAAT
TGTCAGTTTCATAGGGTGATCAAGGAATTTATGATTCAAGCTGGCGACTT
TCTTAAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTC
ATGTATTTACTATTAAGCATTTTTATCCCAAATGTTTATGCTCACGAGAC
AAGAGAGAATGCGCGAATAGTTAATTTAAGGTACGGAAAGCACAGAACAT
TAAGCCTACCCGAGCGAAGTCTCTGGAAATCAAGTAAACGGATGCCTCAA
AAGCTGTGGATAAGCTGTAATGAATTAATTATAAAGAGGATATAAAAAAC
TTATTTGGTATTTTTTAATGTGTGCGTCTCAAGGGCGAATTC
Sequences:
>MK000055_SSR_W93 ID=MK000055_SSR_W93; Name=MK000055 SSR-W93; organism=Daucus carota; type=genetic_marker
GAATTCGCCCTTGAGACGCACATGTGCCACAGACACTTTAAAGATCTGTT
ACTATAATATGATGAGGCAACATTTAGAAATTGCAATGTGCAATTTCTGA
TTGTAATATAATATATGTGGTTACTTTCATTTTTTGATGTATGCCTTAAT
TTAAGAATCAACCTTTATTTACTGAGTTAGTGGTGTCGGATATATGAATT
TGGACATACACAGTGCACAAATAATAATATATTAATACTTAATTATCTGG
CAAGTTCTCAAACATGAAACATATTCCAGAGAGATATACTTGGACAGATG
TAGTAAGTATGTATATATATTTTAGTACATACCTATCTTTGCACTTTTTG
GCATCTTAATGACTTTCTAAATATAAGGGCTTCTGAAGCTCTTAAAAGAT
CGAGAGCTATCTAAGTACAATTTTTATAATAGGGCGTTTCTTGTTCTTAT
AATTCGTTTGAACTTGCAGGAAAGCAGGATTACCTGTTGGTTACAAGAAT
TGTCAGTTTCATAGGGTGATCAAGGAATTTATGATTCAAGCTGGCGACTT
TCTTAAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTC
ATGTATTTACTATTAAGCATTTTTATCCCAAATGTTTATGCTCACGAGAC
AAGAGAGAATGCGCGAATAGTTAATTTAAGGTACGGAAAGCACAGAACAT
TAAGCCTACCCGAGCGAAGTCTCTGGAAATCAAGTAAACGGATGCCTCAA
AAGCTGTGGATAAGCTGTAATGAATTAATTATAAAGAGGATATAAAAAAC
TTATTTGGTATTTTTTAATGTGTGCGTCTCAAGGGCGAATTC
This is the primary representative sequence for this feature.
Sequence Length:
842
Product Length:
287
Repeat Motif:
(CT)16
Screening Method:
Product size by agarose gel