Resource Type:
Genetic Marker
Name:
MK001095 GSSR-096
Identifier:
MK001095_GSSR_096
Organism:
Marker Type:
SSR
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Alessandro MS, Galmarini CR, Iorizzo M, Simon PW. Molecular mapping of vernalization requirement and fertility restoration genes in carrot.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2013 Feb; 126(2):415-23.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001095 GSSR-096, is adjacent to primer, GSSR-96-F. |
| The genetic_marker, MK001095 GSSR-096, is adjacent to primer, GSSR-96-R. |
| The genetic_marker, MK001095 GSSR-096, is adjacent to primer, GSSR-96-F. |
| The genetic_marker, MK001095 GSSR-096, is adjacent to primer, GSSR-96-R. |
| The genetic_marker, MK001095 GSSR-096, is adjacent to gene, DCAR_013910. |
| The genetic_marker, MK001095 GSSR-096, is located in gene, LOC108215756. |
| The marker_locus, GSSR-096, is an instance of genetic_marker, MK001095 GSSR-096. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Fig_2.4 | Chr4 | 46.17 | GSSR-096 | MapViewer |
| 2013 10117 B | LG04 | 57.4 | GSSR-096 | MapViewer |
| 2016 Integ NG full map | CH4 | 60.209 | GSSR-096 | MapViewer |
| 2011 B493×QAL B493 | LG04 | 49.9 | GSSR-096 | MapViewer |
| 2015 SFF×HM2 | Chr4 | 15.697 | GSSR-096 | MapViewer |
| 2016 Integ NG bin map | CH4 | 58.395 | GSSR-096 | MapViewer |
| 2015 MB Merged | Chr4 | 46.17 | GSSR-096 | MapViewer |
| 2013 Criolla×Bienal | 4 | 22.6 | GSSR-096 | MapViewer |
| 2016 70349 NG bin map | Chr4 | 7.37 | GSSR-096 | MapViewer |
| 2016 70349 NG full map | Chr4 | 7.37 | GSSR-096 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr4 | 46.17 | GSSR-096 | MapViewer |
| 2013 10117 A | LG04 | 46.2 | GSSR-096 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr4 | 15.697 | GSSR-096 | MapViewer |
| 2011 B493×QAL QAL | LG04 | 53.1 | GSSR-096 | MapViewer |
Synonyms:
- MK001095
Sequence Coordinates:
DCARv2_Chr4:26447823..26448158-
View location in JBrowse:
Sequence:
ACGGATGTCTCGGCGGCGAGGCAGCGTCGTTTTCGCGAGTTGAGTTGCCG
CCGAATATCGAGAGAGACGAGAGAGATGATGTCGTCGAGAGGGAGACAAA
GACGATGAGAGAGAGGCAGGAGAAGGAGAAGGAGGAGACGCCATTCGAGA
TCCATGACCTTTCTCGTTATCTGCACCACTAGTTTCTGCGGATTTTGCAA
CATCATCATCATCATTGAAGCTGCTTCATATATTTGTATGTATAGGCGTG
TGTATAAGTTGTAGAGCTATGAATGAGAGATTTTGAATGTTAGGCCTTTG
AAAATTCAATAGAGAAGAAGAAGCTAGAGAGCTTAATTAGCTTTGCTTTA
ACCGCGGTAATCACCTTCTAATCAAAGTCATTATACAACTATTCAGCCAA
TTTAAGCAGTATTTTTATTGCTTTACGTTTAANAAAAGATATTGAC
Sequences:
>MK001095_GSSR_096 ID=MK001095_GSSR_096; Name=MK001095 GSSR-096; organism=Daucus carota; type=genetic_marker
ACGGATGTCTCGGCGGCGAGGCAGCGTCGTTTTCGCGAGTTGAGTTGCCG
CCGAATATCGAGAGAGACGAGAGAGATGATGTCGTCGAGAGGGAGACAAA
GACGATGAGAGAGAGGCAGGAGAAGGAGAAGGAGGAGACGCCATTCGAGA
TCCATGACCTTTCTCGTTATCTGCACCACTAGTTTCTGCGGATTTTGCAA
CATCATCATCATCATTGAAGCTGCTTCATATATTTGTATGTATAGGCGTG
TGTATAAGTTGTAGAGCTATGAATGAGAGATTTTGAATGTTAGGCCTTTG
AAAATTCAATAGAGAAGAAGAAGCTAGAGAGCTTAATTAGCTTTGCTTTA
ACCGCGGTAATCACCTTCTAATCAAAGTCATTATACAACTATTCAGCCAA
TTTAAGCAGTATTTTTATTGCTTTACGTTTAANAAAAGATATTGAC
This is the primary representative sequence for this feature.
Sequence Length:
446