Resource Type:
Genetic Marker
Name:
MK002178 ESSR-073
Identifier:
MK002178_ESSR_073
Organism:
Marker Type:
SSR
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK002178 ESSR-073, is adjacent to primer, ESSR-073-F. |
| The genetic_marker, MK002178 ESSR-073, is adjacent to primer, ESSR-073-R. |
| The genetic_marker, MK002178 ESSR-073, is adjacent to gene, DCAR_022815. |
| The genetic_marker, MK002178 ESSR-073, is adjacent to gene, LOC108192992. |
| The marker_locus, ESSR-073, is an instance of genetic_marker, MK002178 ESSR-073. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH6 | 35.47 | ESSR-073 | MapViewer |
| 2015 MB Merged | Chr6 | 30.313 | ESSR-073 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr6 | 26.711 | ESSR-073 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr6 | 30.313 | ESSR-073 | MapViewer |
| 2014 70349 | Chromosome_6 | 28.591 | ESSR-073 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr6 | 30.313 | ESSR-073 | MapViewer |
| 2016 Integ NG full map | CH6 | 38.287 | ESSR-073 | MapViewer |
| 2015 SFF×HM2 | Chr6 | 26.711 | ESSR-073 | MapViewer |
| 2016 70349 NG bin map | Chr6 | 28.591 | ESSR-073 | MapViewer |
| 2016 70349 NG full map | Chr6 | 28.591 | ESSR-073 | MapViewer |
Synonyms:
- MK002178
Sequence Coordinates:
DCARv2_Chr6:5445468..5445753-
View location in JBrowse:
Sequence:
TGTCTGGATGGGGGAAATTAGTTGTAGCTATAACTATCTATCTATCTTTG
AACAGAGATGTTAAATGTGGATTTGTGGTTGCCTTTTGTATGTAAGAACC
TAAGCCTCAATTGCATGTTTCCAGGATGCTATTTCGCTAAGACTTGTTGA
ATGGAAGGTTAAGTTATGATGATGCTCAATTCTGTTACATCTCTGTTCTT
TGTGTTAAGTTGTCTTTTGCTTTAACTATTTGGGCTTGTTTATGTCGGAG
ATTGA
Sequences:
>MK002178_ESSR_073 ID=MK002178_ESSR_073; Name=MK002178 ESSR-073; organism=Daucus carota; type=genetic_marker
TGTCTGGATGGGGGAAATTAGTTGTAGCTATAACTATCTATCTATCTTTG
AACAGAGATGTTAAATGTGGATTTGTGGTTGCCTTTTGTATGTAAGAACC
TAAGCCTCAATTGCATGTTTCCAGGATGCTATTTCGCTAAGACTTGTTGA
ATGGAAGGTTAAGTTATGATGATGCTCAATTCTGTTACATCTCTGTTCTT
TGTGTTAAGTTGTCTTTTGCTTTAACTATTTGGGCTTGTTTATGTCGGAG
ATTGA
This is the primary representative sequence for this feature.
Sequence Length:
255