Resource Type:
Genetic Marker
Name:
MK001282 BSSR-125
Identifier:
MK001282_BSSR_125
Organism:
Marker Type:
SSR
Publication:
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001282 BSSR-125, is adjacent to primer, BSSR-125F. |
| The genetic_marker, MK001282 BSSR-125, is adjacent to primer, BSSR-125R. |
| The genetic_marker, MK001282 BSSR-125, is located in gene, DCAR_004575. |
| The genetic_marker, MK001282 BSSR-125, is located in gene, LOC108199725. |
| The marker_locus, BSSR-125, is an instance of genetic_marker, MK001282 BSSR-125. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG bin map | Chr1 | 82.21 | BSSR-125 | MapViewer |
| 2016 70349 NG full map | Chr1 | 82.21 | BSSR-125 | MapViewer |
| 2011 B493×QAL B493 | LG01 | 151.7 | BSSR-125 | MapViewer |
| 2014 70349 | Chromosome_1 | 82.21 | BSSR-125 | MapViewer |
| 2011 B493×QAL QAL | LG01 | 89.2 | BSSR-125 | MapViewer |
| 2014 yel×cola | LG1 | 62.6 | BSSR-125 | MapViewer |
| 2016 Integ NG full map | CH1 | 69.946 | BSSR-125 | MapViewer |
| 2016 Integ NG bin map | CH1 | 72.765 | BSSR-125 | MapViewer |
Synonyms:
- MK001282
Sequence Coordinates:
DCARv2_Chr1:49405771..49405959+
View location in JBrowse:
Sequence:
GGATGCGTGAGTCTCAGTTTTTGATACAATCAAAAAATTTACCCAGAGAA
TCTTAACCTATGAATGATCCAGTACATTTAGTTCAGCAGTAGCCATCCAT
TTCCTCATTATGAAATACGCTATAAGAGATAACCGTTGCTTTTCTAAAAG
CAAGAAGTAGCTATACTATATTATGCTCTCTCGCCGTCTGGTTATTAGTT
CAGAGAAGAATATGAGGGGGAGCTTGTCTTCTGTTACTCCAGCCTCCAGA
AAACTATCTTTAGTTTTCATGGTCATCTATACATTATTGTTATTTTTAAG
CTCATCCGGTTGCAAAGCTGTATCTTCTTCTTCTTCTTGTGGTAATATTC
AAAACATAAGCTGTCCTTTTACTCTGAAAGGTGATGATCAGCAATGTGAT
TCTTCTTTCTTCACTCTGGAGCTGTCTTGCCTCAAAAATCATACCATCTT
ATATTTACTTGAGGATAAGATTTTTTACGTTAAGAGTATCGATTATGATA
ATCTTTTGGTTAGGATTGTTGATCCAGGCTTTGAAAATAATAACTCTTCT
ATTAAAGAGGATGACTTTCTGGCATTAGAACAAGGCTATGATCCAAACTT
AAGGAAAGTTAATCAGCCTATTACAATGATGGAGTGTCCGTCTCCTGTAA
TTTCTACCCGATACATCAATATCACTTCACCAAATTCTTCATTCTCTTCT
TCAGTATTGGGAAAATATTATGTTTATTCTTATGCGTATATAGTGGTTG
Sequences:
>MK001282_BSSR_125 ID=MK001282_BSSR_125; Name=MK001282 BSSR-125; organism=Daucus carota; type=genetic_marker
GGATGCGTGAGTCTCAGTTTTTGATACAATCAAAAAATTTACCCAGAGAA
TCTTAACCTATGAATGATCCAGTACATTTAGTTCAGCAGTAGCCATCCAT
TTCCTCATTATGAAATACGCTATAAGAGATAACCGTTGCTTTTCTAAAAG
CAAGAAGTAGCTATACTATATTATGCTCTCTCGCCGTCTGGTTATTAGTT
CAGAGAAGAATATGAGGGGGAGCTTGTCTTCTGTTACTCCAGCCTCCAGA
AAACTATCTTTAGTTTTCATGGTCATCTATACATTATTGTTATTTTTAAG
CTCATCCGGTTGCAAAGCTGTATCTTCTTCTTCTTCTTGTGGTAATATTC
AAAACATAAGCTGTCCTTTTACTCTGAAAGGTGATGATCAGCAATGTGAT
TCTTCTTTCTTCACTCTGGAGCTGTCTTGCCTCAAAAATCATACCATCTT
ATATTTACTTGAGGATAAGATTTTTTACGTTAAGAGTATCGATTATGATA
ATCTTTTGGTTAGGATTGTTGATCCAGGCTTTGAAAATAATAACTCTTCT
ATTAAAGAGGATGACTTTCTGGCATTAGAACAAGGCTATGATCCAAACTT
AAGGAAAGTTAATCAGCCTATTACAATGATGGAGTGTCCGTCTCCTGTAA
TTTCTACCCGATACATCAATATCACTTCACCAAATTCTTCATTCTCTTCT
TCAGTATTGGGAAAATATTATGTTTATTCTTATGCGTATATAGTGGTTG
This is the primary representative sequence for this feature.
Sequence Length:
749