MK001160 BSSR-003 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK001160 BSSR-003

Identifier:

MK001160_BSSR_003

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.

Cross Reference:


NCBI Nuccore	FJ147793

Relationship:

There are 3 relationships.
Relationships
The genetic_marker, MK001160 BSSR-003, is adjacent to primer, BSSR-3-F.
The genetic_marker, MK001160 BSSR-003, is adjacent to primer, BSSR-3-R.
The marker_locus, BSSR-003, is an instance of genetic_marker, MK001160 BSSR-003.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 70349 NG bin map	Chr1	39.492	BSSR-003	MapViewer
2016 70349 NG full map	Chr1	39.492	BSSR-003	MapViewer
2011 B493×QAL QAL	LG01	31.4	BSSR-003	MapViewer
2011 B493×QAL B493	LG01	83.6	BSSR-003	MapViewer
2016 Integ NG bin map	CH1	34.889	BSSR-003	MapViewer
2016 Integ NG full map	CH1	33.989	BSSR-003	MapViewer
2014 70349	Chromosome_1	39.492	BSSR-003	MapViewer

Synonyms:

MK001160

Sequence Coordinates:

DCARv2_Chr1:16723280..16723521+

View location in JBrowse:

DCARv2_Chr1:16723280..16723521+

Sequence:

TTATTTGTTTGAGTTAACTGATTGTTTTATTCATAAAAAAGCCTAGTCTC
TCTATGTCTCATCTCTCTTTGTCGCTCCTTGTCTCTCTCTTGCGCGCGCG
CGCACACACACTCAATTGCTCTGTTATTTGTTGTTTTGGTTGTGTTTGCA
TGCTTGTATAAAATATTTATGTTTTATTTGTATATTTTTGTGTGTTTGTA
TGTAGTTTTCCTGTTTTTGTATGCTTGTATGTTTTTGTCTTTGATGGTCA
AGTTGTGTATTATTTAAAAAAAATAGTGCTTGTATATATTTTTGTTTTAG
CTTATTTTAACCATGTAATTAAGAGTTAGTAGTATTAATAATTAAAAGGA
AATTAACTCAGGGTTGCACTGGAAACTAATAAACAATATAATTGTGCTTG
ATATAATATATAGTGATGGAGGACGATGAAACTATATGAATAAACCTACC
AAAGTTTAGTGACGGCTGTATTACGGGGATTAAAAGTTTTGTTAGGAATG
CAGTTTCTAGATTTTCAGTAGGTGACGAAATAACATGTCCTTGCAAGAAA
TGTGAAAATGATAAGTGGTCTGGTCAAGATATAGTATATAGCCATCTCAT
CTACAATGTACGTAGAATGGATATGTGAGGTTTCTCGACAAAAGAGTGAC
ACTAAAATGGATTGTCAGGCTGGTACAGACTTTGGAGATAATTTAGGAGA
CATGTTGCACCGTACTCAAGGAATGCATATTGGTGACCATGAGGTGGTTA
AAGTCCCAGATGCCAATACTAGTAAATTTCAGCGTCATATGGAAGACGGA
AAGCAGCCATTATATCCGGGCTATTCAAATTTTTCTAGATTAAGTTTTAT
CATTAGGCTTTATTCCTTAAAATGTGTACATGGAATAACAGAGGCTGCAT
TCGGGGATTTGCTAGAGTTTTTGAGGGAAGCTTTTCCACAGGCCCACATA
CCTCTATCTTTCAATTCTGCAAATAATATCATAAGAGATATAGGTCTGGA
TTACGAAAAAATACACGCATGTCCAAACGATTGCATGCTCTATTGAGGGG
AAAATAGAGATGCAAATGTTTGTAAAAGTTGTGGTGTTTCAAGATGGCAA
GTAGTGGAAGAGCAAGGCAACATGCACAATGGTCCAAAGACGGTGATTCG
CAAAGTTCCAGCAAAAGTTATACGTTATTTCCCGCTGAAACCAAGGATGT
AGAGGTTGTTTATGTCGAAGGAGCATTCTGAACTTATGACCTGGCATGCC
ATGGGAAGAAAAAATGATGGAAAACTTCGTCATCCTGGTGATGCCGAGGC
ATGGAAGGCTATGGATTCAGTTTATCCTGATTTTTCAATAGAAAAGAGGA
ATATTAGACTTGGTGTAGCCTCTTATGATTTCAGTCCTTAGCGTACAATG
ACTACAAGTTACTCAACCTGGCCAATTATATTGGTAAACTATAACTTGCC
ACCGTGGCTGTGCATGAAGCCTGAGAATTTGATTCTTTCGACAATCATTC
TCGAT

Sequences:

Primary genetic marker Sequence (1,505bp)

>MK001160_BSSR_003 ID=MK001160_BSSR_003; Name=MK001160 BSSR-003; organism=Daucus carota; type=genetic_marker
TTATTTGTTTGAGTTAACTGATTGTTTTATTCATAAAAAAGCCTAGTCTC
TCTATGTCTCATCTCTCTTTGTCGCTCCTTGTCTCTCTCTTGCGCGCGCG
CGCACACACACTCAATTGCTCTGTTATTTGTTGTTTTGGTTGTGTTTGCA
TGCTTGTATAAAATATTTATGTTTTATTTGTATATTTTTGTGTGTTTGTA
TGTAGTTTTCCTGTTTTTGTATGCTTGTATGTTTTTGTCTTTGATGGTCA
AGTTGTGTATTATTTAAAAAAAATAGTGCTTGTATATATTTTTGTTTTAG
CTTATTTTAACCATGTAATTAAGAGTTAGTAGTATTAATAATTAAAAGGA
AATTAACTCAGGGTTGCACTGGAAACTAATAAACAATATAATTGTGCTTG
ATATAATATATAGTGATGGAGGACGATGAAACTATATGAATAAACCTACC
AAAGTTTAGTGACGGCTGTATTACGGGGATTAAAAGTTTTGTTAGGAATG
CAGTTTCTAGATTTTCAGTAGGTGACGAAATAACATGTCCTTGCAAGAAA
TGTGAAAATGATAAGTGGTCTGGTCAAGATATAGTATATAGCCATCTCAT
CTACAATGTACGTAGAATGGATATGTGAGGTTTCTCGACAAAAGAGTGAC
ACTAAAATGGATTGTCAGGCTGGTACAGACTTTGGAGATAATTTAGGAGA
CATGTTGCACCGTACTCAAGGAATGCATATTGGTGACCATGAGGTGGTTA
AAGTCCCAGATGCCAATACTAGTAAATTTCAGCGTCATATGGAAGACGGA
AAGCAGCCATTATATCCGGGCTATTCAAATTTTTCTAGATTAAGTTTTAT
CATTAGGCTTTATTCCTTAAAATGTGTACATGGAATAACAGAGGCTGCAT
TCGGGGATTTGCTAGAGTTTTTGAGGGAAGCTTTTCCACAGGCCCACATA
CCTCTATCTTTCAATTCTGCAAATAATATCATAAGAGATATAGGTCTGGA
TTACGAAAAAATACACGCATGTCCAAACGATTGCATGCTCTATTGAGGGG
AAAATAGAGATGCAAATGTTTGTAAAAGTTGTGGTGTTTCAAGATGGCAA
GTAGTGGAAGAGCAAGGCAACATGCACAATGGTCCAAAGACGGTGATTCG
CAAAGTTCCAGCAAAAGTTATACGTTATTTCCCGCTGAAACCAAGGATGT
AGAGGTTGTTTATGTCGAAGGAGCATTCTGAACTTATGACCTGGCATGCC
ATGGGAAGAAAAAATGATGGAAAACTTCGTCATCCTGGTGATGCCGAGGC
ATGGAAGGCTATGGATTCAGTTTATCCTGATTTTTCAATAGAAAAGAGGA
ATATTAGACTTGGTGTAGCCTCTTATGATTTCAGTCCTTAGCGTACAATG
ACTACAAGTTACTCAACCTGGCCAATTATATTGGTAAACTATAACTTGCC
ACCGTGGCTGTGCATGAAGCCTGAGAATTTGATTCTTTCGACAATCATTC
TCGAT

This is the primary representative sequence for this feature.

Sequence Length:

1505