MK001038 GSSR-039

Resource Type: 
Genetic Marker
Name: 
MK001038 GSSR-039
Identifier: 
MK001038_GSSR_039
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
  2. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 3 relationships.
Relationships
The genetic_marker, MK001038 GSSR-039, is adjacent to primer, GSSR-39-F.
The genetic_marker, MK001038 GSSR-039, is adjacent to primer, GSSR-39-R.
The marker_locus, GSSR-039, is an instance of genetic_marker, MK001038 GSSR-039.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2013 10117 BLG0496.8GSSR-039MapViewer
2011 B493×QAL QALLG0477.9GSSR-039MapViewer
2011 B493×QAL B493LG0465.2GSSR-039MapViewer
2013 10117 ALG0478.5GSSR-039MapViewer
Synonyms: 
  • MK001038
Sequence Coordinates: 
DCARv2_Chr4:15317904..15318029+
View location in JBrowse: 
DCARv2_Chr4:15317904..15318029+
Sequence: 
AATTCTACACATAGTTTTTTTATTTGTATAATTTGTTTTATGTAACATTA
ATAAAATTTTGATATTTTTACCACCATTATATAACATCATTAAAATCTTG
ATGTATATATAATAAGCTAATAATAGTAATTGAGTGATAATTATTGTTTG
TTTTCCATTGCAGTTAAGTGAAAAATGACAAATATTTTTGTCACAAAGTA
GCTACTATTTTTTTTCGAGTTCTTATATGCCCTTTTCTTTTTTCTTTATA
TATTTATTATAAAATAACGCTCAAGACGACTTGGCTTGTCTCTTCACATC
ATTCAGTTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAC
GTATGTATGTTTGTATGTATATATGTATATGTTTGTATATATTATATAGT
GTGTGTGTGGGTAACAAATTGACTAACCCCAAATGTATCTCAAATTGGAG
AGATGCTTTTTTCTTAATTTATGAAATTTGT
Sequences: 
>MK001038_GSSR_039 ID=MK001038_GSSR_039; Name=MK001038 GSSR-039; organism=Daucus carota; type=genetic_marker
AATTCTACACATAGTTTTTTTATTTGTATAATTTGTTTTATGTAACATTA
ATAAAATTTTGATATTTTTACCACCATTATATAACATCATTAAAATCTTG
ATGTATATATAATAAGCTAATAATAGTAATTGAGTGATAATTATTGTTTG
TTTTCCATTGCAGTTAAGTGAAAAATGACAAATATTTTTGTCACAAAGTA
GCTACTATTTTTTTTCGAGTTCTTATATGCCCTTTTCTTTTTTCTTTATA
TATTTATTATAAAATAACGCTCAAGACGACTTGGCTTGTCTCTTCACATC
ATTCAGTTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAC
GTATGTATGTTTGTATGTATATATGTATATGTTTGTATATATTATATAGT
GTGTGTGTGGGTAACAAATTGACTAACCCCAAATGTATCTCAAATTGGAG
AGATGCTTTTTTCTTAATTTATGAAATTTGT
This is the primary representative sequence for this feature.
Sequence Length: 
481