MK001003 GSSR-004

Resource Type: 
Genetic Marker
Name: 
MK001003 GSSR-004
Identifier: 
MK001003_GSSR_004
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
  2. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  3. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  4. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
  5. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 3 relationships.
Relationships
The genetic_marker, MK001003 GSSR-004, is adjacent to primer, GSSR-4-F.
The genetic_marker, MK001003 GSSR-004, is adjacent to primer, GSSR-4-R.
The marker_locus, GSSR-004, is an instance of genetic_marker, MK001003 GSSR-004.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2015 MB MergedChr656.021GSSR-004MapViewer
2014 J.Parsons Th. Fig_3.5Chr656.021GSSR-004MapViewer
2016 70349 NG bin mapChr653.3GSSR-004MapViewer
2015 SFF×HM2Chr652.677GSSR-004MapViewer
2014 J.Parsons Th. SFF×HM2Chr652.677GSSR-004MapViewer
2014 yel×colaLG695.3GSSR-004MapViewer
2016 70349 NG full mapChr653.3GSSR-004MapViewer
2011 B493×QAL QALLG0668.9GSSR-004MapViewer
2014 J.Parsons Th. Fig_2.4Chr656.021GSSR-004MapViewer
2016 Integ NG bin mapCH659.763GSSR-004MapViewer
2016 Integ NG full mapCH662.614GSSR-004MapViewer
2011 B493×QAL B493LG0662.8GSSR-004MapViewer
Synonyms: 
  • MK001003
Sequence Coordinates: 
DCARv2_Chr6:31861822..31862088-
View location in JBrowse: 
DCARv2_Chr6:31861822..31862088-
Sequence: 
ACCAAACTTAAGATCTTAAGCGACCTTTCTCTAATATAAATGATTAATCA
AACCCGTAATCACTTTCATTTCAACTGAAAAAACGCTAATTGCTCATTTA
AAATTCAGTGACCTCTTAAAAAAGTATGTGGCTACCCTACGCGCTCTATG
AAGTGGTCAAGGTAGGGGGTGTGAGTTCAGCAAAAAGGTAATGAAACTAT
GTTTGCTTTCTTGCACATACAATATTGTGATGCAGCACTGTTGCAATGTT
AAGATACTTTATGTTTCAGTAACATAATGATCAATCTTGCCACTAAAAGA
GCACTCCATATATGCATTAGAATCCATAATCCATTTTAATAGTCACATGT
CAGTATGCGAGTTTCTGTATGGCCTGCTTAGTAATCCAAAGTTTGTGTTT
TTGTCGCATTTTAATTGATTTCCTAGTCATTCGATTTTGTTGCAAGTCTA
TTTTTTTTTTCTTTTCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TGTTATTATGAATTTTCTATCGATGTTTCCTGTCTATTGTATCTGAATAT
GAGTATGAAGTCTTTTAAAATTTTAAGGGAATG
Sequences: 
>MK001003_GSSR_004 ID=MK001003_GSSR_004; Name=MK001003 GSSR-004; organism=Daucus carota; type=genetic_marker
ACCAAACTTAAGATCTTAAGCGACCTTTCTCTAATATAAATGATTAATCA
AACCCGTAATCACTTTCATTTCAACTGAAAAAACGCTAATTGCTCATTTA
AAATTCAGTGACCTCTTAAAAAAGTATGTGGCTACCCTACGCGCTCTATG
AAGTGGTCAAGGTAGGGGGTGTGAGTTCAGCAAAAAGGTAATGAAACTAT
GTTTGCTTTCTTGCACATACAATATTGTGATGCAGCACTGTTGCAATGTT
AAGATACTTTATGTTTCAGTAACATAATGATCAATCTTGCCACTAAAAGA
GCACTCCATATATGCATTAGAATCCATAATCCATTTTAATAGTCACATGT
CAGTATGCGAGTTTCTGTATGGCCTGCTTAGTAATCCAAAGTTTGTGTTT
TTGTCGCATTTTAATTGATTTCCTAGTCATTCGATTTTGTTGCAAGTCTA
TTTTTTTTTTCTTTTCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TGTTATTATGAATTTTCTATCGATGTTTCCTGTCTATTGTATCTGAATAT
GAGTATGAAGTCTTTTAAAATTTTAAGGGAATG
This is the primary representative sequence for this feature.
Sequence Length: 
633