Resource Type:
Genetic Marker
Name:
MK001005 GSSR-006
Identifier:
MK001005_GSSR_006
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Alessandro MS, Galmarini CR, Iorizzo M, Simon PW. Molecular mapping of vernalization requirement and fertility restoration genes in carrot.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2013 Feb; 126(2):415-23.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001005 GSSR-006, is adjacent to primer, GSSR-6-F. |
| The genetic_marker, MK001005 GSSR-006, is adjacent to primer, GSSR-6-R. |
| The genetic_marker, MK001005 GSSR-006, is adjacent to primer, GSSR-6-F. |
| The genetic_marker, MK001005 GSSR-006, is adjacent to primer, GSSR-6-R. |
| The genetic_marker, MK001005 GSSR-006, is adjacent to gene, DCAR_013321. |
| The genetic_marker, MK001005 GSSR-006, is located in gene, LOC108216442. |
| The marker_locus, GSSR-006, is an instance of genetic_marker, MK001005 GSSR-006. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2011 SS1061QTL | 1061QTL-5 | 21.7 | GSSR-006 | MapViewer |
| 2014 yel×cola | LG4 | 34.1 | GSSR-006 | MapViewer |
| 2013 10117 A | LG04 | 34.6 | GSSR-006 | MapViewer |
| 2011 B493×QAL QAL | LG04 | 43.5 | GSSR-006 | MapViewer |
| 2013 Criolla×Bienal | 4 | 18.1 | GSSR-006 | MapViewer |
| 2011 B493×QAL B493 | LG04 | 38.6 | GSSR-006 | MapViewer |
| 2011 SS1061 | 1061-4 | 19.893 | GSSR-006 | MapViewer |
| 2013 10117 B | LG04 | 34.7 | GSSR-006 | MapViewer |
Synonyms:
- MK001005
Sequence Coordinates:
DCARv2_Chr4:31056055..31056336-
View location in JBrowse:
Sequence:
CCCCCTTTTTAATGCCCCGCCTCGCAGAATCACAGCCCACCTCAGATGAT
TGTGATGATGAATCAGTAGCAGTAGCAGTAGCAGTAGCCATAGCAGCATC
TGCTGTAGAAATTTGATTTTGTTTATTATCGTTATTAATCTCTTTCAAAA
CCAGTGCCGTTTCTTTCGCTATCTCCTCTTGATTCTTCTTCGCCATTACT
GATTCTTCAGCTTCAGAGAGGGAATAAAAGAGAATGTTGAAGAAATCTCT
CTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCCGTCTCTATCTCT
TTCTCTCTGTGTGTGAAGGGGGTGATTGTGCCAATTGCATGTTGTGTTTA
TCAGATTTAGAAGATTTAAGTAGAATCTAGAATTTGGGAGCTAGATCTAT
TAATTATGATTAATGAGGAGATATGATGAGATTTCATGGATTCATTAATG
ATAAAGAGAAACGCTTACGCTTATTGGAAAC
Sequences:
>MK001005_GSSR_006 ID=MK001005_GSSR_006; Name=MK001005 GSSR-006; organism=Daucus carota; type=genetic_marker
CCCCCTTTTTAATGCCCCGCCTCGCAGAATCACAGCCCACCTCAGATGAT
TGTGATGATGAATCAGTAGCAGTAGCAGTAGCAGTAGCCATAGCAGCATC
TGCTGTAGAAATTTGATTTTGTTTATTATCGTTATTAATCTCTTTCAAAA
CCAGTGCCGTTTCTTTCGCTATCTCCTCTTGATTCTTCTTCGCCATTACT
GATTCTTCAGCTTCAGAGAGGGAATAAAAGAGAATGTTGAAGAAATCTCT
CTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCCGTCTCTATCTCT
TTCTCTCTGTGTGTGAAGGGGGTGATTGTGCCAATTGCATGTTGTGTTTA
TCAGATTTAGAAGATTTAAGTAGAATCTAGAATTTGGGAGCTAGATCTAT
TAATTATGATTAATGAGGAGATATGATGAGATTTCATGGATTCATTAATG
ATAAAGAGAAACGCTTACGCTTATTGGAAAC
This is the primary representative sequence for this feature.
Sequence Length:
481