Resource Type:
Genetic Marker
Name:
MK001015 GSSR-016
Identifier:
MK001015_GSSR_016
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001015 GSSR-016, is adjacent to primer, GSSR-16-F. |
| The genetic_marker, MK001015 GSSR-016, is adjacent to primer, GSSR-16-R. |
| The genetic_marker, MK001015 GSSR-016, is located in gene, DCAR_030401. |
| The genetic_marker, MK001015 GSSR-016, is located in gene, LOC108203145. |
| The marker_locus, GSSR-016, is an instance of genetic_marker, MK001015 GSSR-016. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 yel×cola | LG9 | 39 | GSSR-016 | MapViewer |
| 2011 B493×QAL B493 | LG09 | 78.7 | GSSR-016 | MapViewer |
| 2015 MB Merged | Chr9 | 38.253 | GSSR-016 | MapViewer |
| 2011 SS1061 | 1061-9 | 31.085 | GSSR-016 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr9 | 34.183 | GSSR-016 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr9 | 38.253 | GSSR-016 | MapViewer |
| 2011 SS1061QTL | 1061QTL-6 | 4.54 | GSSR-016 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr9 | 38.253 | GSSR-016 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1F3 | Chr9 | 51.232 | GSSR-016 | MapViewer |
| 2015 SFF×HM2 | Chr9 | 34.183 | GSSR-016 | MapViewer |
| 2011 B493×QAL QAL | LG09 | 84.6 | GSSR-016 | MapViewer |
Synonyms:
- MK001015
Sequence Coordinates:
DCARv2_Chr9:25098935..25099155+
View location in JBrowse:
Sequence:
ACATTACCACCTGGTCAAGGGTAGACCGTGAAGTCTGGAAGAGGATCTGT
CCGCCAGGTTTCAGCACTCGTGAGAACTCATCCAACAATTTTTTATCAAG
AAAATCCAATGAATGGCAGATGCAAACGACAATATCCACAGAGGAAGGAT
CCACAGGCAAGGAGCCTGCAATACATAAACCATACAATTATCGCCAATAC
TGATAAAATTGCTACCATATTCAAAATACTAATACATATGTGTGTGTGTG
TGTGTGTACGCATGTATGTATGTGTGTATGTATGTGCAATATATTGTAAA
GCACCAATAGAGATCTAGGAAGTGGCTGGGCAGCATTCAAGTGACTCGAA
GGGT
Sequences:
>MK001015_GSSR_016 ID=MK001015_GSSR_016; Name=MK001015 GSSR-016; organism=Daucus carota; type=genetic_marker
ACATTACCACCTGGTCAAGGGTAGACCGTGAAGTCTGGAAGAGGATCTGT
CCGCCAGGTTTCAGCACTCGTGAGAACTCATCCAACAATTTTTTATCAAG
AAAATCCAATGAATGGCAGATGCAAACGACAATATCCACAGAGGAAGGAT
CCACAGGCAAGGAGCCTGCAATACATAAACCATACAATTATCGCCAATAC
TGATAAAATTGCTACCATATTCAAAATACTAATACATATGTGTGTGTGTG
TGTGTGTACGCATGTATGTATGTGTGTATGTATGTGCAATATATTGTAAA
GCACCAATAGAGATCTAGGAAGTGGCTGGGCAGCATTCAAGTGACTCGAA
GGGT
This is the primary representative sequence for this feature.
Sequence Length:
354