Resource Type:
Genetic Marker
Name:
MK001016 GSSR-017
Identifier:
MK001016_GSSR_017
Organism:
Marker Type:
FISH
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001016 GSSR-017, is adjacent to primer, GSSR-17-F. |
| The genetic_marker, MK001016 GSSR-017, is adjacent to primer, GSSR-17-R. |
| The genetic_marker, MK001016 GSSR-017, is located in gene, DCAR_010791. |
| The genetic_marker, MK001016 GSSR-017, is located in gene, LOC108213705. |
| The marker_locus, GSSR-017, is an instance of genetic_marker, MK001016 GSSR-017. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2011 FISH | CHR03 | 13.132 | GSSR-017 | MapViewer |
| 2016 70349 NG bin map | Chr3 | 35.358 | GSSR-017 | MapViewer |
| 2013 10117 B | LG03 | 104.4 | GSSR-017 | MapViewer |
| 2016 Integ NG bin map | CH3 | 49.072 | GSSR-017 | MapViewer |
| 2011 FISH | CHR03 | 14.308 | GSSR-017 | MapViewer |
| 2016 Integ NG full map | CH3 | 47.537 | GSSR-017 | MapViewer |
| 2011 B493×QAL QAL | LG03 | 86.9 | GSSR-017 | MapViewer |
| 2011 B493×QAL B493 | LG03 | 73.8 | GSSR-017 | MapViewer |
| 2016 70349 NG full map | Chr3 | 35.358 | GSSR-017 | MapViewer |
| 2011 SS1061QTL | 1061QTL-1 | 28.47 | GSSR-017 | MapViewer |
| 2013 10117 A | LG03 | 65.4 | GSSR-017 | MapViewer |
| 2011 SS1061 | 1061-3 | 20.105 | GSSR-017 | MapViewer |
Synonyms:
- MK001016
- C025M09
Sequence Coordinates:
DCARv2_Chr3:28668857..28669072+
View location in JBrowse:
Sequence:
ACTTTTGAAAACTACCATTTACCCCCTAACGACAATCTCAATCACTCCTT
GAAGTTCCCGGTCTCTTCCACACTCATGGATTATTATTCTACTACTACTA
CTACTACTACTACTACGAGCAATAACTCTCAACTGTCGAACACGACTCAT
GCCTACTCCAGTGATTTAGCAAGTTACTTGAACACATTTCCAAATATTAA
TCAAATGGATGAAACGATACTCTATGGATTTGATGAGATGAGTAGCTTGT
GTGGAGTGGACATAGTGAATGCTGG
Sequences:
>MK001016_GSSR_017 ID=MK001016_GSSR_017; Name=MK001016 GSSR-017; organism=Daucus carota; type=genetic_marker
ACTTTTGAAAACTACCATTTACCCCCTAACGACAATCTCAATCACTCCTT
GAAGTTCCCGGTCTCTTCCACACTCATGGATTATTATTCTACTACTACTA
CTACTACTACTACTACGAGCAATAACTCTCAACTGTCGAACACGACTCAT
GCCTACTCCAGTGATTTAGCAAGTTACTTGAACACATTTCCAAATATTAA
TCAAATGGATGAAACGATACTCTATGGATTTGATGAGATGAGTAGCTTGT
GTGGAGTGGACATAGTGAATGCTGG
This is the primary representative sequence for this feature.
Sequence Length:
275