Resource Type:
Genetic Marker
Name:
MK001084 GSSR-085
Identifier:
MK001084_GSSR_085
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001084 GSSR-085, is adjacent to primer, GSSR-85-F. |
| The genetic_marker, MK001084 GSSR-085, is adjacent to primer, GSSR-85-R. |
| The genetic_marker, MK001084 GSSR-085, is located in gene, LOC108196140. |
| The marker_locus, GSSR-085, is an instance of genetic_marker, MK001084 GSSR-085. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG full map | Chr7 | 8.859 | GSSR-085 | MapViewer |
| 2013 10117 A | LG07 | 121.6 | GSSR-085 | MapViewer |
| 2013 10117 B | LG07 | 114.7 | GSSR-085 | MapViewer |
| 2011 B493×QAL B493 | LG07 | 94.9 | GSSR-085 | MapViewer |
| 2016 70349 NG bin map | Chr7 | 8.859 | GSSR-085 | MapViewer |
| 2011 SS1061QTL | 1061QTL-8 | 0.56 | GSSR-085 | MapViewer |
| 2011 B493×QAL QAL | LG07 | 90.6 | GSSR-085 | MapViewer |
| 2016 Integ NG bin map | CH7 | 50.212 | GSSR-085 | MapViewer |
| 2011 SS1061 | 1061-7a | 4.299 | GSSR-085 | MapViewer |
| 2014 yel×cola | LG7 | 46.7 | GSSR-085 | MapViewer |
| 2016 Integ NG full map | CH7 | 49.04 | GSSR-085 | MapViewer |
Synonyms:
- MK001084
Sequence Coordinates:
DCARv2_Chr7:30467999..30468214+
View location in JBrowse:
Sequence:
ACTTCAAGAGCCATTTGCAAGCTTATATGACTCGGTGGATGAATTAAGAG
AAATATTCGAGACGTGGCATCCATTAATGAGTAAAGTTTATTTTGTATGC
TCTCTCTCCCTCTCCCTCTCTCTATCTCTCCCTCTATCTATCTATCTATT
TATCAATCTATCTATCTATCTGTCTGTCTATCTGTCTGTCTGTCTATCTA
TCATGCTTGACACTGTAGATATACAACTTATTTTAAAACAATGGCAAAGC
AGTGGAGTTGGTTGGT
Sequences:
>MK001084_GSSR_085 ID=MK001084_GSSR_085; Name=MK001084 GSSR-085; organism=Daucus carota; type=genetic_marker
ACTTCAAGAGCCATTTGCAAGCTTATATGACTCGGTGGATGAATTAAGAG
AAATATTCGAGACGTGGCATCCATTAATGAGTAAAGTTTATTTTGTATGC
TCTCTCTCCCTCTCCCTCTCTCTATCTCTCCCTCTATCTATCTATCTATT
TATCAATCTATCTATCTATCTGTCTGTCTATCTGTCTGTCTGTCTATCTA
TCATGCTTGACACTGTAGATATACAACTTATTTTAAAACAATGGCAAAGC
AGTGGAGTTGGTTGGT
This is the primary representative sequence for this feature.
Sequence Length:
266