Resource Type:
Genetic Marker
Name:
MK001106 GSSR-107
Identifier:
MK001106_GSSR_107
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Ali A, Matthews WC, Cavagnaro PF, Iorizzo M, Roberts PA, Simon PW. Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot.. The Journal of heredity. 2014; 105(2):288-91.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Alessandro MS, Galmarini CR, Iorizzo M, Simon PW. Molecular mapping of vernalization requirement and fertility restoration genes in carrot.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2013 Feb; 126(2):415-23.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001106 GSSR-107, is adjacent to primer, GSSR-107-F. |
| The genetic_marker, MK001106 GSSR-107, is adjacent to primer, GSSR-107-F. |
| The genetic_marker, MK001106 GSSR-107, is adjacent to primer, GSSR-107-R. |
| The genetic_marker, MK001106 GSSR-107, is located in gene, DCAR_000426. |
| The genetic_marker, MK001106 GSSR-107, is located in gene, LOC108192440. |
| The genetic_marker, MK001106 GSSR-107, is adjacent to primer, GSSR-107-R. |
| The marker_locus, GSSR-107, is an instance of genetic_marker, MK001106 GSSR-107. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2013 Criolla×Bienal | 8 | 21 | GSSR-107 | MapViewer |
| 2011 B493×QAL QAL | LG08 | 46 | GSSR-107 | MapViewer |
| 2015 HM3 | Chr8 | 44.605 | GSSR-107 | MapViewer |
| 2014 J.Parsons Th. HM3 | Chr8 | 44.605 | GSSR-107 | MapViewer |
| 2011 SS1061QTL | 1061QTL-4 | 0 | GSSR-107 | MapViewer |
| 2011 SS1061 | 1061-8 | 21.756 | GSSR-107 | MapViewer |
| 2014 Mj-2 | LG08 | 14.8 | GSSR-107 | MapViewer |
| 2011 B493×QAL B493 | LG08 | 79.6 | GSSR-107 | MapViewer |
| 2014 yel×cola | LG8 | 12 | GSSR-107 | MapViewer |
| 2011 FISH | CHR08 | 2.145 | GSSR-107 | MapViewer |
| 2011 FISH | CHR08 | 1.65 | GSSR-107 | MapViewer |
Synonyms:
- MK001106
- C064A04
Sequence Coordinates:
DCARv2_C10742394:4818..5074+
View location in JBrowse:
Sequence:
ACTCCTACTATGTTAAAATTTTGAGAAATGCCCCCTTGAATGATATCTCC
TGGCTCCGCCACTGGATCCATTCCTTTATTAAGATTCAAGACTATGCATA
TCTTCTGGTCTTTTGACATGAAGGGATATAGACCTATTGGCCAGAGCTTC
ATTTCATTCCATGATATACATACATACATACATACATACATACATACATA
TATATGTATATACACACACACATACATACATACATATGAAAGATAACTGA
CACAAAAAATGGGTTAGACACAATGCACACTAGTTAAGTGTCTTTGTAAG
CCAATGACTCAGAAGTATTGTTTCAGTGAATAGCAAAGAAAGTGATATTC
AACTCACCTCAAATCCGCCTGGAAATGTTGCACCACGGAATGGAGTCTTT
TCCACTGACCCTTGAGAGCAGCTATCTGATGAATA
Sequences:
>MK001106_GSSR_107 ID=MK001106_GSSR_107; Name=MK001106 GSSR-107; organism=Daucus carota; type=genetic_marker
ACTCCTACTATGTTAAAATTTTGAGAAATGCCCCCTTGAATGATATCTCC
TGGCTCCGCCACTGGATCCATTCCTTTATTAAGATTCAAGACTATGCATA
TCTTCTGGTCTTTTGACATGAAGGGATATAGACCTATTGGCCAGAGCTTC
ATTTCATTCCATGATATACATACATACATACATACATACATACATACATA
TATATGTATATACACACACACATACATACATACATATGAAAGATAACTGA
CACAAAAAATGGGTTAGACACAATGCACACTAGTTAAGTGTCTTTGTAAG
CCAATGACTCAGAAGTATTGTTTCAGTGAATAGCAAAGAAAGTGATATTC
AACTCACCTCAAATCCGCCTGGAAATGTTGCACCACGGAATGGAGTCTTT
TCCACTGACCCTTGAGAGCAGCTATCTGATGAATA
This is the primary representative sequence for this feature.
Sequence Length:
494