MK001123 GSSR-124

Resource Type: 
Genetic Marker
Name: 
MK001123 GSSR-124
Identifier: 
MK001123_GSSR_124
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
  2. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
  3. Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
  4. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK001123 GSSR-124, is adjacent to primer, GSSR-124-F.
The genetic_marker, MK001123 GSSR-124, is adjacent to primer, GSSR-124-R.
The genetic_marker, MK001123 GSSR-124, is located in gene, DCAR_008820.
The genetic_marker, MK001123 GSSR-124, is located in gene, LOC108214228.
The marker_locus, GSSR-124, is an instance of genetic_marker, MK001123 GSSR-124.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 SS1061QTL1061QTL-183.72GSSR-124MapViewer
2011 B493×QAL B493LG0326.9GSSR-124MapViewer
2013 10117 BLG0340.8GSSR-124MapViewer
2011 SS10611061-359.935GSSR-124MapViewer
2014 J.Parsons Th. Br1091×HM1F3Chr39.094GSSR-124MapViewer
2013 10117 ALG030GSSR-124MapViewer
2011 B493×QAL QALLG0340.3GSSR-124MapViewer
Synonyms: 
  • MK001123
Sequence Coordinates: 
DCARv2_Chr3:1589676..1590062+
View location in JBrowse: 
DCARv2_Chr3:1589676..1590062+
Sequence: 
AACAAGCACCGACCCTTACTATCGCTAACATCAAATCTAGTAGTTGCTTT
TAAATCCCTTTTATATGACACCACAAAAAGTGGATGGTGAAGAAAGAAAA
TTAAACAAGCAGACTCGTCTTTAACATTAAAGTGGAAAAAAATGAAATAC
ATATAATGAGAGAAATACTTATATATACATACATACATACATACATACAT
ACATACATACATACATACATACATACATACATACATACATACAGACAAGC
ATGCATACATACATACATACATACATACATATATATATATAGAGAGAGAG
AGAGGAGCTACAGTATTTACTTTGGGGCATGGGGGCGCTTCAACTAAATT
TCCAGTAAGCTGATGGGTTCTAGAAAACATGACATATTTCTCCATGGATT
TGCAGAGGCCACTAGACTCGGAAATAATATATTTATAGAATGACCGACGT
ATTGCAATGCTAGCAAAGCTAATATTGTTGACACATGTGGATCTCAAATC
GGTCAGCTGGCCAGGCTTCAGGTTTGGATAGACTGAATAGAGATAGGAAG
TGATTAGATAATCCAGCACAGCATCTCCTAGAAACTCCAGTCTCTGTTCA
AGCAGCAATGTGTTAAAGATTGT
Sequences: 
>MK001123_GSSR_124 ID=MK001123_GSSR_124; Name=MK001123 GSSR-124; organism=Daucus carota; type=genetic_marker
AACAAGCACCGACCCTTACTATCGCTAACATCAAATCTAGTAGTTGCTTT
TAAATCCCTTTTATATGACACCACAAAAAGTGGATGGTGAAGAAAGAAAA
TTAAACAAGCAGACTCGTCTTTAACATTAAAGTGGAAAAAAATGAAATAC
ATATAATGAGAGAAATACTTATATATACATACATACATACATACATACAT
ACATACATACATACATACATACATACATACATACATACATACAGACAAGC
ATGCATACATACATACATACATACATACATATATATATATAGAGAGAGAG
AGAGGAGCTACAGTATTTACTTTGGGGCATGGGGGCGCTTCAACTAAATT
TCCAGTAAGCTGATGGGTTCTAGAAAACATGACATATTTCTCCATGGATT
TGCAGAGGCCACTAGACTCGGAAATAATATATTTATAGAATGACCGACGT
ATTGCAATGCTAGCAAAGCTAATATTGTTGACACATGTGGATCTCAAATC
GGTCAGCTGGCCAGGCTTCAGGTTTGGATAGACTGAATAGAGATAGGAAG
TGATTAGATAATCCAGCACAGCATCTCCTAGAAACTCCAGTCTCTGTTCA
AGCAGCAATGTGTTAAAGATTGT
This is the primary representative sequence for this feature.
Sequence Length: 
623