MK002116 ESSR-011 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK002116 ESSR-011

Identifier:

MK002116_ESSR_011

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison

Relationship:

There are 5 relationships.
Relationships
The genetic_marker, MK002116 ESSR-011, is adjacent to primer, ESSR-011-F.
The genetic_marker, MK002116 ESSR-011, is adjacent to primer, ESSR-011-R.
The genetic_marker, MK002116 ESSR-011, is located in gene, DCAR_017117.
The genetic_marker, MK002116 ESSR-011, is located in gene, LOC108219822.
The marker_locus, ESSR-011, is an instance of genetic_marker, MK002116 ESSR-011.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2015 HM3	Chr5	17.861	ESSR-011	MapViewer
2011 SS1061	1061-5	44.649	ESSR-011	MapViewer
2015 SFF×HM2	Chr5	22.879	ESSR-011	MapViewer
2014 J.Parsons Th. SFF×HM2	Chr5	22.879	ESSR-011	MapViewer
2016 Integ NG full map	CH5	28.526	ESSR-011	MapViewer
2016 70349 NG full map	Chr5	39.949	ESSR-011	MapViewer
2014 J.Parsons Th. HM3	Chr5	17.861	ESSR-011	MapViewer
2014 70349	Chromosome_5	39.949	ESSR-011	MapViewer

Synonyms:

MK002116

Sequence Coordinates:

DCARv2_Chr5:11733192..11733474-

View location in JBrowse:

DCARv2_Chr5:11733192..11733474-

Sequence:

CAATCAGGAAGCTTTGAGCCTCTTGTCTCTTCTTTCTTTACCACCTCCTC
ACTTTCTCTCTTTACCATTGTTTTTGCTTCATTCTCCCTTTCCAGCTCCT
CTGTTTTCTCTTCCAAAATCTTGACATGGCTCGATGTTTCTTCTTCGTAT
AGTGTAGCTATCTCTTCATCATCATCATCATCTGGTTCACTCAAATCATC
ATCTGACTGTAGAGAAAATGAGGCATTACTATAACTTACTCTACTCTCAT
CTTCA

Sequences:

Primary genetic marker Sequence (255bp)

>MK002116_ESSR_011 ID=MK002116_ESSR_011; Name=MK002116 ESSR-011; organism=Daucus carota; type=genetic_marker
CAATCAGGAAGCTTTGAGCCTCTTGTCTCTTCTTTCTTTACCACCTCCTC
ACTTTCTCTCTTTACCATTGTTTTTGCTTCATTCTCCCTTTCCAGCTCCT
CTGTTTTCTCTTCCAAAATCTTGACATGGCTCGATGTTTCTTCTTCGTAT
AGTGTAGCTATCTCTTCATCATCATCATCATCTGGTTCACTCAAATCATC
ATCTGACTGTAGAGAAAATGAGGCATTACTATAACTTACTCTACTCTCAT
CTTCA

This is the primary representative sequence for this feature.

Sequence Length:

255