MK002118 ESSR-013 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK002118 ESSR-013

Identifier:

MK002118_ESSR_013

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.

Relationship:

There are 4 relationships.
Relationships
The genetic_marker, MK002118 ESSR-013, is adjacent to primer, ESSR-013-F.
The genetic_marker, MK002118 ESSR-013, is adjacent to primer, ESSR-013-R.
The genetic_marker, MK002118 ESSR-013, is located in gene, LOC108199295.
The marker_locus, ESSR-013, is an instance of genetic_marker, MK002118 ESSR-013.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 Integ NG full map	CH8	46.424	ESSR-013	MapViewer
2011 SS1061	1061-8	7.335	ESSR-013	MapViewer
2015 HM3	Chr8	16.569	ESSR-013	MapViewer
2016 70796 NG full map	Chr8	21.104	ESSR-013	MapViewer
2016 Integ NG bin map	CH8	39.198	ESSR-013	MapViewer
2013 10117 B	LG08	67.5	ESSR-013	MapViewer
2013 10117 A	LG08	62.3	ESSR-013	MapViewer
2016 70796 NG bin map	Chr8	21.104	ESSR-013	MapViewer
2014 J.Parsons Th. HM3	Chr8	16.569	ESSR-013	MapViewer

Synonyms:

MK002118

Sequence Coordinates:

DCARv2_Chr8:18909318..18909543-

View location in JBrowse:

DCARv2_Chr8:18909318..18909543-

Sequence:

TCCACTTCAACACATTTCCCTTTTAGATCCTTGCATACATATATAGTTAC
ACATACACGTTTCAGATCTAACATAACAAAACAATTTACTCAAATTCAAG
TGATCTCTCTCACAATTGGTGAATAACTTTACCAATTTGAGAGAGAGAGA
CAGAGAGATTTTGAGAGGGAGAGAGGCACACAGAGAGATTTTTGAGAGAG
GGAGAGAAGGCACACA

Sequences:

Primary genetic marker Sequence (216bp)

>MK002118_ESSR_013 ID=MK002118_ESSR_013; Name=MK002118 ESSR-013; organism=Daucus carota; type=genetic_marker
TCCACTTCAACACATTTCCCTTTTAGATCCTTGCATACATATATAGTTAC
ACATACACGTTTCAGATCTAACATAACAAAACAATTTACTCAAATTCAAG
TGATCTCTCTCACAATTGGTGAATAACTTTACCAATTTGAGAGAGAGAGA
CAGAGAGATTTTGAGAGGGAGAGAGGCACACAGAGAGATTTTTGAGAGAG
GGAGAGAAGGCACACA

This is the primary representative sequence for this feature.

Sequence Length:

216

Repeat Motif:

(GA)6