Resource Type:
Genetic Marker
Name:
MK002192 ESSR-087
Identifier:
MK002192_ESSR_087
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK002192 ESSR-087, is adjacent to primer, ESSR-087-F. |
| The genetic_marker, MK002192 ESSR-087, is adjacent to primer, ESSR-087-R. |
| The genetic_marker, MK002192 ESSR-087, is located in gene, DCAR_008874. |
| The genetic_marker, MK002192 ESSR-087, is located in gene, LOC108214418. |
| The marker_locus, ESSR-087, is an instance of genetic_marker, MK002192 ESSR-087. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2011 SS1061QTL | 1061QTL-1 | 82.27 | ESSR-087 | MapViewer |
| 2015 SFF×HM2 | Chr3 | 2.187 | ESSR-087 | MapViewer |
| 2016 70349 NG full map | Chr3 | 79.788 | ESSR-087 | MapViewer |
| 2014 70349 | Chromosome_3 | 79.788 | ESSR-087 | MapViewer |
| 2015 MB Merged | Chr3 | 4.133 | ESSR-087 | MapViewer |
| 2013 10117 B | LG03 | 47.9 | ESSR-087 | MapViewer |
| 2013 10117 A | LG03 | 6.3 | ESSR-087 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr3 | 4.133 | ESSR-087 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr3 | 2.187 | ESSR-087 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr3 | 4.133 | ESSR-087 | MapViewer |
| 2016 Integ NG full map | CH3 | 6.033 | ESSR-087 | MapViewer |
| 2011 SS1061 | 1061-3 | 58.655 | ESSR-087 | MapViewer |
Synonyms:
- MK002192
Sequence Coordinates:
DCARv2_Chr3:2084813..2085111-
View location in JBrowse:
Sequence:
GCATCAGTCGACGAGAACAAACACCACCATCATAAGGTCGCTTCCCAGCA
GAAGCAGGCTGCACCCCCTGTTGAAGCTGCTGTCTCATCTGCAGCTGCTG
CTGCTGCTGCTGCTGCTGTTGCTGCAGCAACTGAGCTCGCTGCATTTGTG
GCATAGACTGCAGTAGTTGTTGCTGTTGCTGTTGCTGTTGCCTAAGTCGC
TGTTGCTGTATTAAAGCTTGCAACTGAGGATTAGGGTTTTGTATCTGCAT
AGGAT
Sequences:
>MK002192_ESSR_087 ID=MK002192_ESSR_087; Name=MK002192 ESSR-087; organism=Daucus carota; type=genetic_marker
GCATCAGTCGACGAGAACAAACACCACCATCATAAGGTCGCTTCCCAGCA
GAAGCAGGCTGCACCCCCTGTTGAAGCTGCTGTCTCATCTGCAGCTGCTG
CTGCTGCTGCTGCTGCTGTTGCTGCAGCAACTGAGCTCGCTGCATTTGTG
GCATAGACTGCAGTAGTTGTTGCTGTTGCTGTTGCTGTTGCCTAAGTCGC
TGTTGCTGTATTAAAGCTTGCAACTGAGGATTAGGGTTTTGTATCTGCAT
AGGAT
This is the primary representative sequence for this feature.
Sequence Length:
255
Repeat Motif:
(TGTTGC)4