MK002640 K0104

Resource Type: 
Genetic Marker
Name: 
MK002640 K0104
Identifier: 
MK002640_K0104
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK002640 K0104, is adjacent to primer, K0104_X.
The genetic_marker, MK002640 K0104, is adjacent to primer, K0104_Y.
The genetic_marker, MK002640 K0104, is adjacent to primer, K0104_Common.
The genetic_marker, MK002640 K0104, is located in gene, LOC108220021.
The marker_locus, K0104, is an instance of genetic_marker, MK002640 K0104.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70796 NG bin mapChr525.724K0104MapViewer
2016 Integ NG bin mapCH541.979K0104MapViewer
2016 70349 NG full mapChr526.029K0104MapViewer
2014 70349Chromosome_526.029K0104MapViewer
2016 70796 NG full mapChr525.724K0104MapViewer
2016 Integ NG full mapCH542.768K0104MapViewer
2016 70349 NG bin mapChr526.029K0104MapViewer
2016 80592 NG full mapChr531.887K0104MapViewer
Synonyms: 
  • MK002640
Sequence Coordinates: 
DCARv2_Chr5:22110677..22110743+
View location in JBrowse: 
Sequence: 
CMCTCGACAACAAGCCACCCAAGTCCAACCAAGGCTCMTGGGTCAGCCCA
GACTGGCTCACTTCTCTTACC
Sequences: 
>MK002640_K0104 ID=MK002640_K0104; Name=MK002640 K0104; organism=Daucus carota; type=genetic_marker
CMCTCGACAACAAGCCACCCAAGTCCAACCAAGGCTCMTGGGTCAGCCCA
GACTGGCTCACTTCTCTTACC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CMCTCGACAACAAGCCACCCAAGTCCAACCAAGGCTC
Three Prime Flanking Region: 
TGGGTCAGCCCAGACTGGCTCACTTCTCTTACC
SNP: 
A/C