Resource Type:
Genetic Marker
Name:
MK002641 K0105
Identifier:
MK002641_K0105
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK002641 K0105, is adjacent to primer, K0105_X. |
| The genetic_marker, MK002641 K0105, is adjacent to primer, K0105_Y. |
| The genetic_marker, MK002641 K0105, is adjacent to primer, K0105_Common. |
| The genetic_marker, MK002641 K0105, is located in gene, DCAR_016697. |
| The genetic_marker, MK002641 K0105, is located in gene, LOC108222283. |
| The marker_locus, K0105, is an instance of genetic_marker, MK002641 K0105. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH5 | 17.074 | K0105 | MapViewer |
| 2016 80592 NG bin map | Chr5 | 10.056 | K0105 | MapViewer |
| 2016 80592 NG full map | Chr5 | 10.056 | K0105 | MapViewer |
| 2014 70349 | Chromosome_5 | 49.84 | K0105 | MapViewer |
| 2016 70796 NG bin map | Chr5 | 58.293 | K0105 | MapViewer |
| 2016 70796 NG full map | Chr5 | 58.293 | K0105 | MapViewer |
| 2016 Integ NG full map | CH5 | 17.611 | K0105 | MapViewer |
Synonyms:
- MK002641
Sequence Coordinates:
DCARv2_Chr5:6576822..6576866+
View location in JBrowse:
Sequence:
TCAAATCCACGTCTTTTCCTTGGTTACATATGTCCATWATCTGACCCGCC
ACGAGCCCTTGTGAGCCCACA
Sequences:
>MK002641_K0105 ID=MK002641_K0105; Name=MK002641 K0105; organism=Daucus carota; type=genetic_marker
TCAAATCCACGTCTTTTCCTTGGTTACATATGTCCATWATCTGACCCGCC
ACGAGCCCTTGTGAGCCCACA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TCAAATCCACGTCTTTTCCTTGGTTACATATGTCCAT
Three Prime Flanking Region:
ATCTGACCCGCCACGAGCCCTTGTGAGCCCACA
SNP:
A/T