Skip to main content
Toggle navigation
Species
Organism Summary
Phylogenetic Trees
CarrotOmics Taxonomy Tree
Data
Genome Assemblies
Data Overview
Data Download
Data Submission
Marker Types
Transcript and Expression Data
Other Databases
Search
MegaSearch
Blast+
File Search
Gene and Transcript Search
Germplasm and BioSample Search
Map Search
Marker Search
Primer Search
Project, Analysis, or Assay Search
Publication Search
QTL or MTL Search
Qualitative Trait Search
Quantitative Trait Search
Sequence Search
Tools
BLAST+
JBrowse
MapViewer
Expression Heatmap
Web Services and Breeding API (BrAPI)
General
About
Disclaimer
News Archives
Meetings and Conferences
Status Report
Work Completed
Work in Progress
Help
User Manual
Contact
Search
Data Template
Template Type
MAP_POSITION
Template
map_position
download
Headers
Column
Description
*
marker_qtl_mtl
Name of the marker, QTL or MTL. Please provide the detailed data in 'Marker', 'QTL', 'MTL' or 'Haplotype_Block' sheet.
locus_name
When a RFLP (eg. AA07) corresponds to more than one locus, the marker name (eg. AA07) is recorded in marker/qtl/mtl column and the specific name for each map position (eg. AA07A, AA07B) is recorded in this 'locus_name' column. Use AA07 as a marker name and the loci names as aliases for the marker name in 'Marker' Sheet. When a MTL is mapped to multiple locations, use the MTL_name in 'MTL' sheet in 'marker/qtl/mtl' column and the locus name of the specific map position in 'locus_name' colum.
*
map_name
Name of the genetic map.
*
linkage_group
Name of the linkage group.
linkage_group_order
The order of linkage groups for display. Some maps have linkage groups orders of which are not obvious such as G1V, G1G, G2V, etc.
chr_name
Chromosome name for the linkage group when it\'s known (eg. At1, Dt1, etc in cotton).
chr_number
Chromosome number for the linkage group when it\'s known (eg. chr1, chr26, etc).
chromosome_arm
Name of the chromosome_arm for fish map.
bin_name
Name of the bin if the locus is belongs to a bin. If a molecular marker belongs to multiple bins, list all of them in separate rows.
start
The position of the locus (cM) or start position of the QTL.
stop
The end position of the QTL or marker when a marker corresponds to a region in a genome.
qtl_peak
Center position or the most likely position of the QTL.
comments
Any comments for the map position.
*
Required field
cvterms
cv.name
cvterm.name
MAIN
bin
MAIN
chr_name
MAIN
chr_number
MAIN
comments
MAIN
marker_locus
MAIN
qtl_peak
MAIN
start
MAIN
stop
sequence
chromosome_arm
sequence
genetic_marker
sequence
haplotype_block
sequence
heritable_phenotypic_marker
sequence
linkage_group
sequence
qtl
relationship
adjacent_to
relationship
contained_in
relationship
instance_of
relationship
located_in
Returns to
the template list page