Daucus carota var. sativus

Resource Type: 
Organism
Abbreviation: 
Daucus carota var. sativus
Superclass: 
Apiaceae
Genus: 
Daucus
Species: 
carota
Infraspecific Taxon: 
varietas sativus
Lineage: 
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus; Daucus carota
Cross Reference: 
GRINTaxon
NCBITaxon
Analysis: 
NameDescription
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Relationship: 
There is 1 relationship.
Relationships
The organism, Daucus carota subsp. sativus, is a homotypic synonym of organism, Daucus carota var. sativus.
File: 
FileType
DCARv2 Gaps JBrowse GFF3GFF3
16.marker.93microsoft excel xlsx file
Biosample Browser: 
There are 107 biosamples.
NameTissueTreatmentDescription
SAMN00259691Not setNot set

mRNA library was from mix of 60% root tissue and 40% leaf tissue, from 10-week old plants. B493 is a released carrot inbred line, see URL https://www.ars.usda.gov/midwest-area/madison-wi/vegetable-crops-research/docs/simon-release-b6439-b6274/ for inbred line release announcement from September 8, 1983. QAL is a wild carrot, common name Queen Anne's Lace.
SAMN00259712Not setNot set

mRNA library was from mix of 60% root tissue and 40% leaf tissue, from 10-week old plants. B6274 is a released carrot inbred line, see URL https://www.ars.usda.gov/midwest-area/madison-wi/vegetable-crops-research/docs/simon-release-b6439-b6274/ for inbred line release announcement from September 8, 1983.
SAMN00259713Not setNot set

mRNA library was from mix of 60% root tissue and 40% leaf tissue, from 10-week old plants. B7262 is a released carrot inbred line, see URL https://www.ars.usda.gov/Services/docs.htm?docid=5489&pf=1 for inbred line release announcement from October 27, 1993.
SAMN30121103leafNot setDomestication Status: Cultivated; Storage Root Color: Yellow
SAMN30121114leafNot setDomestication Status: Cultivated; Storage Root Color: Yellow
SAMN30121155leafNot setDomestication Status: Cultivated; Storage Root Color: Orange
SAMN30121157leafNot setDomestication Status: Cultivated; Storage Root Color: Orange
SAMN30121158leafNot setDomestication Status: Cultivated; Storage Root Color: Orange
SAMN30121210leafNot setDomestication Status: Cultivated; Storage Root Color: Orange
SAMN30121211leafNot setDomestication Status: Cultivated; Storage Root Color: Orange
Accession: 
AccessionAccession Type
PI 515999Germplasm Accession
PI 652148Germplasm Accession
PI 652162Germplasm Accession
PI 432899Germplasm Accession
PI 436674Germplasm Accession
PI 508470Germplasm Accession
PI 652160Germplasm Accession
Ames 7702Germplasm Accession
PI 652163Germplasm Accession
PI 483348Germplasm Accession