MIPSSEDNATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGH
RCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLC
YLGGEVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
LARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAM
PMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGT
RVIGDPARPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ*
| Relationships |
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| The polypeptide, DCAR_001898, derives from mRNA, DCAR_001898. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A2I0W9N7 ((ABC transporter I family member 20 {ECO:0000313|EMBL:PKU72376.1}))
HSP 1 Score: 480.33 bits (1235), Expect = 1.284e-170
Identity = 228/286 (79.72%), Postives = 253/286 (88.46%), Query Frame = 0
Query: 4 SSEDNATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 289
SS D A T V I NLRFTYPGIDGHPPPGSKPLI FSL L+ G RCLLVG+NGAGKTTILKILGGKH+VD DMVR+MGRSAFHDT+L SS +L YLGGEVLD++LSWR+H+ SDGQRRRVQICMGLLKPFKVLLLDEITVDLDV+ R++LL +LKK+CE RGATIIYATHIFDGLE WPSHIVYVAHGKLQLA+P+D+VK++S LSLMRTVE WLRKERDE RK RKERK GLPE+E+ VDGTRV GDPAR +NNGWAAGRL+STVAGEENF SSNRV+RQ
Sbjct: 13 SSADKAAETAIVEIRNLRFTYPGIDGHPPPGSKPLIDGFSLQLHAGDRCLLVGSNGAGKTTILKILGGKHIVDPDMVRIMGRSAFHDTALTSSGELSYLGGEVLDIDLSWRMHRSSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVVVRSNLLIYLKKECERRGATIIYATHIFDGLEDWPSHIVYVAHGKLQLALPLDKVKELSNLSLMRTVEKWLRKERDEDRKRRKERKENGLPEYENSVDGTRVTGDPARMLNNGWAAGRLHSTVAGEENFYFSSNRVLRQ 298
Match: A0A4S4D4I5 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 479.559 bits (1233), Expect = 2.752e-170
Identity = 241/295 (81.69%), Postives = 257/295 (87.12%), Query Frame = 0
Query: 10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE-----------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDP----ARPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 289
+ PTV INNL FTYPGIDGHPPPGS PLI DFSLTL+PG+RCLLVG+NGAGKTTILKILGGKHMV+ MVRV+GRSAFHDT+L SS LCYLGGE VLDV+LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WPSHIVYVAHGKLQLAMPMD+VK+ S LSLMRTVE WLRKERDEARK RKERKA GLPEFE VDG+RV GDP AR +NNGWAAGRLNST+AGEENFV SSNRV+RQ
Sbjct: 6 NSNPTVGINNLSFTYPGIDGHPPPGSTPLIHDFSLTLHPGNRCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVLDVDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPSHIVYVAHGKLQLAMPMDKVKETSNLSLMRTVEQWLRKERDEARKRRKERKANGLPEFEKHVDGSRVTGDPALAAARALNNGWAAGRLNSTIAGEENFVFSSNRVLRQ 300
Match: A0A061ER40 ((Non-intrinsic ABC protein 9 {ECO:0000313|EMBL:EOY07515.1}))
HSP 1 Score: 477.633 bits (1228), Expect = 5.552e-169
Identity = 237/324 (73.15%), Postives = 260/324 (80.25%), Query Frame = 0
Query: 10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 289
++ PTV IN LRFTYPGIDGHPPPGS PLI DFSLTLN G+RCLLVG+NGAGKTTILKI+GGKHMV+ MVRV+GRSAFHDT L SS +LCYLGGE VLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WPSHIVYVAHGKLQLAMPMDEVK+IS LSLMRTVESWLRKERDE R+ RKERKA GLPEFE+Q++G+RV GDPA R +NNGWAAGRL+STVAGEENF+ SSNRV+RQ
Sbjct: 5 SSKPTVEINGLRFTYPGIDGHPPPGSAPLIDDFSLTLNAGNRCLLVGSNGAGKTTILKIMGGKHMVEPHMVRVLGRSAFHDTVLASSGELCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVAGIDPKRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLHFLRKECEERGATIIYATHIFDGLEKWPSHIVYVAHGKLQLAMPMDEVKEISNLSLMRTVESWLRKERDEERQKRKERKAHGLPEFENQIEGSRVTGDPARAAVRALNNGWAAGRLHSTVAGEENFLFSSNRVLRQ 328
Match: A0A022PYV4 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 475.322 bits (1222), Expect = 3.581e-168
Identity = 235/324 (72.53%), Postives = 259/324 (79.94%), Query Frame = 0
Query: 5 SEDNATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARPVNNGWAAGRLNSTVAGEENFVLSSNRVIR 288
+E ++ PTV IN L+FTYPGIDGHPPPGS PLI+DFSL+L PG RCL VG+NGAGKTTILKI+GGKHMVD DMVRV+GRSAFHDT+LISS L YLGGE VLDV+LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FLKK+CEERG+TIIYATHIFDGLE+WPSHIVYVAHGKLQLA PM+E+K+ S LSLMRTVESWLRKERDE RK+RKERKA GLPE E +VDG+RV G PAR +NNGWAAGRLNST+AGEENFVLSSNRV+R
Sbjct: 2 AEISSKPQPTVAINKLKFTYPGIDGHPPPGSAPLIEDFSLSLFPGDRCLFVGSNGAGKTTILKIIGGKHMVDPDMVRVLGRSAFHDTALISSGDLSYLGGEWRREVAFAGFEIPIQMDVSAEKMIYGVTGVLPQRRDELIKVLDVDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLKKECEERGSTIIYATHIFDGLENWPSHIVYVAHGKLQLAKPMNEIKEASNLSLMRTVESWLRKERDEDRKIRKERKANGLPEHEKRVDGSRVTGGPARVINNGWAAGRLNSTIAGEENFVLSSNRVLR 325
Match: A0A371F238 ((ABC transporter I family member 20 {ECO:0000313|EMBL:RDX72359.1}) (Fragment))
HSP 1 Score: 474.167 bits (1219), Expect = 3.940e-167
Identity = 238/318 (74.84%), Postives = 258/318 (81.13%), Query Frame = 0
Query: 14 TVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARP----VNNGWAAGRLNSTVAGEENFVLSSNRVI 287
T+VI +LRFTYPGIDGHPPPGS PLIQDFSLTL G RCLLVG+NGAGKTTILKILGGKHMV+ DMVRV+GRSAFHDT+L+SS LCYLGGE VLDV+LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL+FL+K+CEERGATIIYATHIFDGLE+WP++IVYVAHGKLQLAMPMD+VK+ISKLSLMRTVESWLRKERDE RK RKERKA GLPEF QV+G+RV GDPAR +NNGWAAGRLNSTVAGEENF+LSSNR I
Sbjct: 9 TIVIKDLRFTYPGIDGHPPPGSAPLIQDFSLTLCSGDRCLLVGSNGAGKTTILKILGGKHMVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFEIPIQMDVSAQKMIFGVPGIDPLRRAELIKVLDVDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLTFLRKECEERGATIIYATHIFDGLENWPTNIVYVAHGKLQLAMPMDKVKEISKLSLMRTVESWLRKERDEDRKKRKERKAAGLPEFGKQVEGSRVTGDPARAAVRVINNGWAAGRLNSTVAGEENFLLSSNRTI 326
Match: A0A6J1AQF3 ((ABC transporter I family member 20 isoform X1 {ECO:0000313|RefSeq:XP_021289437.1}))
HSP 1 Score: 470.7 bits (1210), Expect = 2.890e-166
Identity = 235/321 (73.21%), Postives = 257/321 (80.06%), Query Frame = 0
Query: 13 PTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 289
PTV IN LRFTYPGIDGHPPPGS PLI DFSLTLN G RCLLVG+NGAGKTTILKILGGKHMV+ MVRV+GRSAFHDT L SS +LCYLGGE VLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WPSHIVYV+HGKLQLAMPMD+VK+IS LSLMRTVESWLRKERD+ R+ RKERKA GLPEFE+Q++G+RV GDPA R +NNGWAAGRL+STVAGEENF+ SSNRV+RQ
Sbjct: 8 PTVEINGLRFTYPGIDGHPPPGSTPLIDDFSLTLNAGDRCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTGLASSGELCYLGGEWRRDVAFAGFEIPIQMDISAEKMIFGVAGIDPKRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLHFLRKECEERGATIIYATHIFDGLEKWPSHIVYVSHGKLQLAMPMDKVKEISNLSLMRTVESWLRKERDKERQKRKERKACGLPEFENQIEGSRVTGDPARAAVRALNNGWAAGRLHSTVAGEENFLFSSNRVLRQ 328
Match: A0A4D6N324 ((CCR4-NOT complex subunit CAF16 {ECO:0000313|EMBL:QCE07241.1}))
HSP 1 Score: 470.7 bits (1210), Expect = 3.228e-166
Identity = 234/323 (72.45%), Postives = 257/323 (79.57%), Query Frame = 0
Query: 10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARP----VNNGWAAGRLNSTVAGEENFVLSSNRVIR 288
+ T+VI +L+FTYPGIDGHPPPGS PLIQDFSLTL RCLLVG+NGAGKTTILKILGGKH+V+ DMVRV+GRSAFHDT+L+SS LCYLGGE VLD++LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WP+HIVYVAHGKLQLAMPM++VK+ISKLSLMRTVESWLRKERDE R+ RKERKA GLPEF QV+G+RV GDPAR NNGWAAGRLNSTVAGEENF+LSSNRV+R
Sbjct: 10 SKAATIVIKDLKFTYPGIDGHPPPGSSPLIQDFSLTLGSADRCLLVGSNGAGKTTILKILGGKHLVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFDVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEDWPTHIVYVAHGKLQLAMPMEKVKEISKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFGKQVEGSRVTGDPARAAVRVTNNGWAAGRLNSTVAGEENFILSSNRVLR 332
Match: A0A5J5BU49 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 470.315 bits (1209), Expect = 3.444e-166
Identity = 236/323 (73.07%), Postives = 256/323 (79.26%), Query Frame = 0
Query: 10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIR 288
+ TVVINNLRFTYPGIDG+PPPGS PLI +FSLTLNPG RCLLVG+NGAGKTTILKILGGKHMV+ DMVRV+GRSAFHDT+L SS LCYLGGE VLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERG TIIYATHIFDGLE WPSHIVYVAHGKLQLAMPMD+VK+IS SLMRTVE+WLRKERDE RK RKERKA GLPEFE Q +G RV GDPA R +NNGWAAGRL+ST+AGEENFVLSSNRV+R
Sbjct: 6 NSNTTVVINNLRFTYPGIDGYPPPGSIPLIDNFSLTLNPGDRCLLVGSNGAGKTTILKILGGKHMVEPDMVRVLGRSAFHDTALTSSGDLCYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVSGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGGTIIYATHIFDGLEDWPSHIVYVAHGKLQLAMPMDKVKEISNRSLMRTVENWLRKERDEDRKRRKERKADGLPEFEKQFEGNRVAGDPARAAVRALNNGWAAGRLHSTIAGEENFVLSSNRVLR 328
Match: A0A444XJF3 ((ABC transporter I family member {ECO:0000313|EMBL:QHN77210.1}))
HSP 1 Score: 469.929 bits (1208), Expect = 5.610e-166
Identity = 234/325 (72.00%), Postives = 258/325 (79.38%), Query Frame = 0
Query: 9 ATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARP----VNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 289
+ PT+ I +L+FTYPGIDGHPPPGS PLIQDFSL+L+ G RCLLVG+NGAGKTTILKILGGKHMV+ MVRV+GRSAFHDT+L SS LCYLGGE VLD++LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WP++IVYVAHGKLQLAMP+D+VK+ SKLSLMRTVESWLRKERDE R+ RKERKA GLPEFE QVDG+RV GDPAR +NNGWAAGRL STVAGEENF+LSSNRV+RQ
Sbjct: 6 GNSEPTIEIKDLKFTYPGIDGHPPPGSAPLIQDFSLSLSSGDRCLLVGSNGAGKTTILKILGGKHMVEPGMVRVLGRSAFHDTNLTSSGDLCYLGGEWRRDVAFAGYEVAIQMDVSAEKMIFGVAGTDPERRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPIDKVKETSKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFEKQVDGSRVAGDPARAAVRVINNGWAAGRLTSTVAGEENFMLSSNRVLRQ 330
Match: A0A6P4BGT3 ((ABC transporter I family member 20 {ECO:0000313|RefSeq:XP_015939594.1}))
HSP 1 Score: 469.544 bits (1207), Expect = 7.217e-166
Identity = 234/325 (72.00%), Postives = 258/325 (79.38%), Query Frame = 0
Query: 9 ATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGE----------------------------------------VLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARP----VNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 289
+ PT+ I +L+FTYPGIDGHPPPGS PLIQDFSL+L+ G RCLLVG+NGAGKTTILKILGGKHMV+ MVRV+GRSAFHDT+L SS LCYLGGE VLD++LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WP++IVYVAHGKLQLAMP+D+VK+ SKLSLMRTVESWLRKERDE R+ RKERKA GLPEFE QVDG+RV GDPAR +NNGWAAGRL STVAGEENF+LSSNRV+RQ
Sbjct: 6 GNSEPTIEIKDLKFTYPGIDGHPPPGSAPLIQDFSLSLSSGDRCLLVGSNGAGKTTILKILGGKHMVEPGMVRVLGRSAFHDTNLTSSGDLCYLGGEWRRDVAFAGYEVAIQMDVSAEKMIFGVAGIDPERRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPIDKVKETSKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFEKQVDGSRVAGDPARAAVRVINNGWAAGRLTSTVAGEENFMLSSNRVLRQ 330
| Match Name | Stats | Description |
|---|---|---|
| A0A2I0W9N7 | E-Value: 1.284e-170, PID: 79.72 | (ABC transporter I family member 20 {ECO:0000313|E... [more] |
| A0A4S4D4I5 | E-Value: 2.752e-170, PID: 81.69 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A061ER40 | E-Value: 5.552e-169, PID: 73.15 | (Non-intrinsic ABC protein 9 {ECO:0000313|EMBL:EOY... [more] |
| A0A022PYV4 | E-Value: 3.581e-168, PID: 72.53 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A371F238 | E-Value: 3.940e-167, PID: 74.84 | (ABC transporter I family member 20 {ECO:0000313|E... [more] |
| A0A6J1AQF3 | E-Value: 2.890e-166, PID: 73.21 | (ABC transporter I family member 20 isoform X1 {EC... [more] |
| A0A4D6N324 | E-Value: 3.228e-166, PID: 72.45 | (CCR4-NOT complex subunit CAF16 {ECO:0000313|EMBL:... [more] |
| A0A5J5BU49 | E-Value: 3.444e-166, PID: 73.07 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A444XJF3 | E-Value: 5.610e-166, PID: 72.00 | (ABC transporter I family member {ECO:0000313|EMBL... [more] |
| A0A6P4BGT3 | E-Value: 7.217e-166, PID: 72.00 | (ABC transporter I family member 20 {ECO:0000313|R... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |