Resource Type:
Polypeptide
Name:
DCAR_028276
Identifier:
DCAR_028276.mRNA-protein
Sequence:
MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVK
EVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLP
RIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVW
EDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLK
RCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGK
LLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVE
AEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRV
AKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP
NYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLF
GLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFI
IAPHHLRMSLVRHLLSDPTGATMLNQCAKEQQQAEHSKASVPLSSGILAS
*
Sequence Length:
551
Sequence Checksum:
8f06a18d2eb7b58393e45091f003fb0e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_028276, derives from mRNA, DCAR_028276. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEX5 ((Putative lycopene epsilon cyclase {ECO:0000313|EMBL:ABB52073.1}))
HSP 1 Score: 1087.79 bits (2812), Expect = 0.000e+0
Identity = 520/525 (99.05%), Postives = 523/525 (99.62%), Query Frame = 0
Match: Q2VEX5 ((Putative lycopene epsilon cyclase {ECO:0000313|EMBL:ABB52073.1}))
HSP 1 Score: 1087.79 bits (2812), Expect = 0.000e+0
Identity = 520/525 (99.05%), Postives = 523/525 (99.62%), Query Frame = 0
Query: 1 MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMLN 525
MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEV SCVAVVEDEEFAD+EDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPG+EAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATM+
Sbjct: 1 MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVISCVAVVEDEEFADEEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGMEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVK 525
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZWV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523275.1}))
HSP 1 Score: 874.389 bits (2258), Expect = 0.000e+0
Identity = 425/525 (80.95%), Postives = 463/525 (88.19%), Query Frame = 0
Match: A0A5J4ZWV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523275.1}))
HSP 1 Score: 874.389 bits (2258), Expect = 0.000e+0
Identity = 425/525 (80.95%), Postives = 463/525 (88.19%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLR----RSNVKVSCGRKS-EMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
CIG RNF TM V STCPTW RRKRLR RS + S S ++R SCVAV ED FAD+ED++KAGGSELLFVQMQ+ K+MD QSKL KLP+I I D++LDLVVIGCGPAGLALAAESA+LGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVW DTIVYLD+GDPI+IGRAYGRVSRHLLHEELL RCVESGVSYLSSKVE+I+EA +G +L+ECE+NIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY K+ V +EA+YPTFLY MPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRL+TMG+R+ KTYEEEWSYIPVGGSLPNT QKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VIANILK M+ + TENISMQAW TLWPQERKRQRAFFLFGLALILQLDI+GIRTFF+TFFRLP WMWQGFLGS+LSS DLVLFAFYMF++AP ++RMSL+RHLLSDPTGATM+
Sbjct: 3 CIGARNFATMVV-STCPTWT-SRRKRLRNKQSRSMHRYSSHISSLQVRSSAGSESCVAVKED--FADEEDYIKAGGSELLFVQMQQKKSMDKQSKLTEKLPQIAIGDTLLDLVVIGCGPAGLALAAESARLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWGDTIVYLDNGDPILIGRAYGRVSRHLLHEELLNRCVESGVSYLSSKVERIVEATNGLNLIECEHNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYIKRTVQCLEAQYPTFLYAMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLETMGVRIIKTYEEEWSYIPVGGSLPNTAQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIANILKRGHSKDMLTHITSTENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPNWMWQGFLGSTLSSADLVLFAFYMFVVAPSNMRMSLIRHLLSDPTGATMI 523
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YMW7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA33137.1}) (Fragment))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 425/526 (80.80%), Postives = 457/526 (86.88%), Query Frame = 0
Match: A0A5B6YMW7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA33137.1}) (Fragment))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 425/526 (80.80%), Postives = 457/526 (86.88%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKS------EMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
CIG RNF +AV STCPTWR RRKRLR V+ S R S ++R SCVA E E+FAD+ED++KAGGSELLFVQMQ++K MD QSKLA KLP+I I D++LDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD DPI+IGRAYGRVSRHLLHEELL RCVES VSYLSSKVE+IIEA +G SL+ECE+NIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRD KQKV + A YPTFLY MPMSPTR+FFEETCLAS DAMPFDLLKKKLMSRL+TMG+RV KTYEEEWSYIPVGGSLPNT QKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VIANILK M+ ENISMQAW LWPQERKRQRAFFLFGLALIL+LDI+GIRTFF TFFRLP WMWQGFLGS+LSS DLVLFAFYMF+IAP+++RM LVRHLLSDPTGATM+
Sbjct: 58 CIGARNFAAVAV-STCPTWR-SRRKRLRNKQVR-SINRYSSYISSLQVRSSAGSESCVA--EKEDFADEEDYIKAGGSELLFVQMQQSKNMDKQSKLADKLPKISIGDTILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDDPILIGRAYGRVSRHLLHEELLNRCVESSVSYLSSKVERIIEATNGQSLIECEHNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCVKQKVQCLGALYPTFLYAMPMSPTRVFFEETCLASNDAMPFDLLKKKLMSRLETMGVRVIKTYEEEWSYIPVGGSLPNTAQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIANILKRGHSKDMLTCSMSIENISMQAWNILWPQERKRQRAFFLFGLALILELDIEGIRTFFHTFFRLPDWMWQGFLGSTLSSADLVLFAFYMFVIAPNNMRMCLVRHLLSDPTGATMI 578
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R480 ((Lycopene epsilon cyclase {ECO:0000313|EMBL:PSS20792.1}))
HSP 1 Score: 868.226 bits (2242), Expect = 0.000e+0
Identity = 414/525 (78.86%), Postives = 452/525 (86.10%), Query Frame = 0
Match: A0A2R6R480 ((Lycopene epsilon cyclase {ECO:0000313|EMBL:PSS20792.1}))
HSP 1 Score: 868.226 bits (2242), Expect = 0.000e+0
Identity = 414/525 (78.86%), Postives = 452/525 (86.10%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVS-----CGRKSEMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
CIG RNF+ MAV S CP WR R++ + N+ + C + RC + V EEFAD+ED+VKAGGSELLFVQMQ+NK MD QSKL KLP I + +++LDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGL GCIEH+W+DTIVYLDD DPIMIGRAYGRVSRHLLHEELLKRCVESGV YLSSKVE+IIEA +GHSL+ECE NIV+PCRLATVASGAASGKLLQYEVGGPRVSVQTAYG+EVEVENNPYDPSLMVFMDYRDY KQKV +EA+YPTFLY MPMSPTR+FFEETCLASKDAMPFDLLKKKL+SRL+ MG+R+ K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VI+NILK I+ R TENISMQAW TLWPQERKRQRAFFLFGLALILQLDIDGIR FFQTFFRLPTWMWQGFLGS+LSS DL LFAFYMF+IAP+++R L+RHLLSDPTGA ML
Sbjct: 3 CIGARNFSAMAV-SACPYWRSRRKRSGNKQNLLIHWYNSWCKSSLQARCSSSAGNDTCVAVKEEFADEEDYVKAGGSELLFVQMQQNKHMDKQSKLTDKLPGISVGNTILDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFRDLGLAGCIEHIWQDTIVYLDDNDPIMIGRAYGRVSRHLLHEELLKRCVESGVLYLSSKVERIIEATNGHSLIECEQNIVVPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGIEVEVENNPYDPSLMVFMDYRDYVKQKVECLEAQYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLISRLEMMGVRILKFYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVISNILKQGHSKEKISQSRSTENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIDGIREFFQTFFRLPTWMWQGFLGSTLSSADLALFAFYMFVIAPNNMRKCLIRHLLSDPTGAIML 526
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UAD9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY27099.1}))
HSP 1 Score: 864.759 bits (2233), Expect = 0.000e+0
Identity = 424/528 (80.30%), Postives = 455/528 (86.17%), Query Frame = 0
Match: A0A2C9UAD9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY27099.1}))
HSP 1 Score: 864.759 bits (2233), Expect = 0.000e+0
Identity = 424/528 (80.30%), Postives = 455/528 (86.17%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRC----VKEVS----SCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
CIG RNFT MAVFS R R R R G S RC V+ S SCVA+ EEFAD+ED++KAGGSEL++VQMQ+NK M+ QSKLA KLP IPI D VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD DPI+IGRAYGRVSRHLLHEELL+RCVESGVSYLSSKVE+IIEA DGHSLV CE +IV+ CRLATVASGAASGKLL YEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQKVP +EAEYPTFLY MPMS TR+FFEETCLASKDAMPFDLLK+KLMSRL+TMGIR+ KTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+ IANILK N +++ R NISMQAW TLWPQERKRQRAFFLFGLALILQLDI+GIRTFF TFFRLP+WMWQGFLGS+LSS DLV+FAFYMF IAP+ +RM LVRHL+SDPTGATM+
Sbjct: 3 CIGARNFTAMAVFSFSAGTSRRRTLRTYRQ------GGLSNKRCHLYRVRASSAGTDSCVAI--KEEFADEEDYIKAGGSELVYVQMQQNKDMEQQSKLADKLPPIPIGDEVLDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDDPILIGRAYGRVSRHLLHEELLRRCVESGVSYLSSKVERIIEASDGHSLVACERDIVVSCRLATVASGAASGKLLLYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYMKQKVPCLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKRKLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASTIANILKQDHPNAKLHHKRSNANISMQAWDTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFHTFFRLPSWMWQGFLGSTLSSADLVVFAFYMFFIAPNDMRMCLVRHLVSDPTGATMI 522
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5ZFW6 ((lycopene epsilon cyclase, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_022751743.1}))
HSP 1 Score: 861.677 bits (2225), Expect = 0.000e+0
Identity = 418/523 (79.92%), Postives = 452/523 (86.42%), Query Frame = 0
Match: A0A6P5ZFW6 ((lycopene epsilon cyclase, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_022751743.1}))
HSP 1 Score: 861.677 bits (2225), Expect = 0.000e+0
Identity = 418/523 (79.92%), Postives = 452/523 (86.42%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVS---SCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
C+G RNF MAV STC TWR RR +R S R + + SCVAV ED FAD+ED++KAGGSELLFVQMQ+NK MD QSKLA KLP I I D+VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLE CIEHVW+DTIVYLDD PIMIGRAYGRVSRHLLHEELL+RCVESGV YLSSKVE IIE DGHSLV CE+N V+PCRL TVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQ+ P +EA+YPTFLY MP+S TR+FFEETCLASKDAMPFDLLKKKL+SRL+TMGI+++K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK GM+N R NISMQAW TLWPQERKRQR+FFLFGLALILQLDI+GIRTFF TFFRLP+WMWQGFLGS+LSS DLVLFAFYMF++AP+ +RM LVRHLLSDPTGATM+
Sbjct: 5 CVGSRNFAAMAV-STCATWRSRRRNLMRTKTALRSHHRFISFKVRASGAGSESCVAVKED--FADEEDYIKAGGSELLFVQMQQNKEMDKQSKLADKLPPISIGDNVLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLERCIEHVWQDTIVYLDDDKPIMIGRAYGRVSRHLLHEELLRRCVESGVVYLSSKVETIIEGTDGHSLVACEDNRVVPCRLVTVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYAKQEFPCLEAQYPTFLYAMPVSSTRVFFEETCLASKDAMPFDLLKKKLVSRLETMGIQISKVYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKKDHSKGMLNSVRNNGNISMQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRTFFHTFFRLPSWMWQGFLGSTLSSADLVLFAFYMFVLAPNDMRMCLVRHLLSDPTGATMI 524
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GLV2 ((Lycopene beta/epsilon cyclase protein {ECO:0000313|EMBL:EOY30388.1}))
HSP 1 Score: 861.292 bits (2224), Expect = 0.000e+0
Identity = 427/532 (80.26%), Postives = 451/532 (84.77%), Query Frame = 0
Match: A0A061GLV2 ((Lycopene beta/epsilon cyclase protein {ECO:0000313|EMBL:EOY30388.1}))
HSP 1 Score: 861.292 bits (2224), Expect = 0.000e+0
Identity = 427/532 (80.26%), Postives = 451/532 (84.77%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVS------------CGRKSEMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
C+G R F MAV STC WR RR L R+ +S GR SE SCVAV ED FAD+EDF+KAGGSEL+FVQMQ+NK MD QSKLA KLP I I D+VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD PIMIGRAYGRVSR LLHEELL+RCVESGV YLSSKVE IIEA DGH+LV CE+N V+PCRL TVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQ+VP EA+YPTFLY MP+S TR+FFEETCLASKDAMPFDLLKKKLMSRL+TMGI + K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK GM R NISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFF TFFRLP+WMWQGFLGS+LSS DLVLFAFYMF+IAP+ LRM LVRHLLSDPTGATM+
Sbjct: 5 CVGARYFAAMAV-STCAAWR-SRRGNLMRTKTVLSKNHGFISFKVRASGRGSE--------SCVAVKED--FADEEDFIKAGGSELVFVQMQQNKEMDKQSKLADKLPPISIGDNVLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRRLLHEELLRRCVESGVMYLSSKVETIIEATDGHNLVACEHNRVVPCRLVTVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYAKQEVPCSEAQYPTFLYAMPLSSTRVFFEETCLASKDAMPFDLLKKKLMSRLETMGITILKVYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKKDHSKGMRTSERNNGNISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFNTFFRLPSWMWQGFLGSNLSSADLVLFAFYMFVIAPNDLRMCLVRHLLSDPTGATMI 524
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KCI7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP33847.1}))
HSP 1 Score: 860.522 bits (2222), Expect = 0.000e+0
Identity = 419/524 (79.96%), Postives = 457/524 (87.21%), Query Frame = 0
Match: A0A067KCI7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP33847.1}))
HSP 1 Score: 860.522 bits (2222), Expect = 0.000e+0
Identity = 419/524 (79.96%), Postives = 457/524 (87.21%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVS----SCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
CIG RNF VFS PT R RR+ LR S ++S + V+ S SCVA+ EE+AD+ED++KAGGSEL+FV+MQ+NK M+ QSKLA KLP IPI D VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF LGL+GCIEHVW+DTIVYLD+ DPI+IGRAYGRVSRHLLHEELL+RCVESGVSYLSSKVE+IIEA +GHSLV CE++IV+PCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQKVP +EAEYPTFLY MPMSPTR+FFEETCLASKDAMPFDLLKKKLMSRL+TM IR+ KTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK M+ + NISMQAW LWPQERKRQRAFFLFGLALILQLDI+GIRTFF TFFRLP WMWQGFLGS+LSS DL+LFAFYMF+IAP+ +RM LVRHLLSDPTGATM+
Sbjct: 3 CIGARNFAATTVFS-FPTGRT-RRRILRTSKHVGISEKRSRLYQVRASSAGSESCVAI--KEEYADEEDYIKAGGSELVFVEMQQNKDMEKQSKLADKLPPIPIGDDVLDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFKGLGLDGCIEHVWQDTIVYLDNDDPILIGRAYGRVSRHLLHEELLRRCVESGVSYLSSKVERIIEAANGHSLVACEHDIVVPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYIKQKVPCLEAEYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMSRLETMQIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKQGHSKSMLTHKISNANISMQAWNALWPQERKRQRAFFLFGLALILQLDIEGIRTFFHTFFRLPNWMWQGFLGSTLSSADLILFAFYMFVIAPNDMRMCLVRHLLSDPTGATMI 522
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G232 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5934783.1}))
HSP 1 Score: 857.055 bits (2213), Expect = 0.000e+0
Identity = 418/527 (79.32%), Postives = 459/527 (87.10%), Query Frame = 0
Match: A0A7J7G232 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5934783.1}))
HSP 1 Score: 857.055 bits (2213), Expect = 0.000e+0
Identity = 418/527 (79.32%), Postives = 459/527 (87.10%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVSS------CVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEE-EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
CIG RNF MAV STCPTWR R+KR R + +V S ++ SS CVA E FAD+ED++KAGGSELLFVQMQ+NK M+ QSKLA KLPRI + +++LDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVW DTIVYLDD DPI+IGRAYGRVSR+LLHEEL+KRCVESGVSYLSSKVE+IIE+ +GHSL+ECE N+V+PCRLATVASGAASGKLLQYEVGGPRVSVQTAYG+EVEVENNPYDP+LMVFMDYRDY K KV +EA+YPTFLY MPMSPTR+FFEETCLASKDAMPFD+LKKKL+SRL+TMG+RV KTYEE EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VIANILK ++ TENISM AW TLWPQERKRQRAFFLFGLALILQLDIDGIRTFF TFFRLPTWMWQGFLGS+LSS DL LFAFYMF+IAP+++RM LVRHLLSDPTGATM+
Sbjct: 3 CIGARNFAAMAV-STCPTWRY-RKKRQRNTLTRVIHRHSSYTSSLRVRSSSAGSDSCVAF--KEGFADEEDYIKAGGSELLFVQMQQNKLMEKQSKLADKLPRISVGNTILDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWGDTIVYLDDNDPILIGRAYGRVSRYLLHEELVKRCVESGVSYLSSKVERIIESTNGHSLIECEQNVVVPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGMEVEVENNPYDPNLMVFMDYRDYVKPKVQCLEAQYPTFLYAMPMSPTRVFFEETCLASKDAMPFDILKKKLISRLETMGVRVIKTYEEVEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIANILKQGHSRDKLSRSWSTENISMLAWNTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFHTFFRLPTWMWQGFLGSTLSSADLALFAFYMFVIAPNNMRMCLVRHLLSDPTGATMI 525
BLAST of DCAR_028276 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZNX0 ((lycopene epsilon cyclase, chloroplastic {ECO:0000313|RefSeq:XP_021276527.1}))
HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 422/524 (80.53%), Postives = 449/524 (85.69%), Query Frame = 0
Match: A0A6J0ZNX0 ((lycopene epsilon cyclase, chloroplastic {ECO:0000313|RefSeq:XP_021276527.1}))
HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 422/524 (80.53%), Postives = 449/524 (85.69%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKS---EMRCVKEVS-SCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATML 524
C+G R F MAV STC WR RR L ++ +S + ++R S SCVAV ED FAD+EDF+KAGGSELLFVQMQ+NK MD QSKLA KLP I I D+VLDLVVIGCGPAGLALAAESAK GL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD PIMIGRAYGRVSRH LHEELL+RCVESGV YLSSKVE IIEA DGH+LV CE+N V+PCRL TVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVF YRDY KQ+VPG EA+YPTFLY MP+S TR+FFEETCLASKDAMPFDLLKKKLMSRL+TMGIR+ K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK GM R NISMQAWKTLWPQERKRQRAFFLFGLALILQLDI GIRTFF TFFRLP+WMWQGFLGS+LSS DLVLFAFYMF+ AP+ LRM LVRHLLSDPTGATM+
Sbjct: 5 CVGARYFAAMAV-STCDAWRS-RRGNLMKTKTALSNNHRFISFKVRASGAGSKSCVAVKED--FADEEDFIKAGGSELLFVQMQQNKEMDKQSKLADKLPPISIGDNVLDLVVIGCGPAGLALAAESAKFGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRHSLHEELLRRCVESGVMYLSSKVETIIEATDGHNLVACEHNRVVPCRLVTVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFAIYRDYAKQEVPGSEAQYPTFLYAMPLSSTRVFFEETCLASKDAMPFDLLKKKLMSRLETMGIRILKVYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKKDHSKGMRTSERNNGNISMQAWKTLWPQERKRQRAFFLFGLALILQLDIGGIRTFFHTFFRLPSWMWQGFLGSNLSSADLVLFAFYMFVTAPNDLRMCLVRHLLSDPTGATMI 524
| Match Name | Stats | Description |
|---|---|---|
| Q2VEX5 | E-Value: 0.000e+0, PID: 99.05 | (Putative lycopene epsilon cyclase {ECO:0000313|EM... [more] |
| A0A5J4ZWV0 | E-Value: 0.000e+0, PID: 80.95 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more] |
| A0A5B6YMW7 | E-Value: 0.000e+0, PID: 80.80 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3313... [more] |
| A0A2R6R480 | E-Value: 0.000e+0, PID: 78.86 | (Lycopene epsilon cyclase {ECO:0000313|EMBL:PSS207... [more] |
| A0A2C9UAD9 | E-Value: 0.000e+0, PID: 80.30 | (Uncharacterized protein {ECO:0000313|EMBL:OAY2709... [more] |
| A0A6P5ZFW6 | E-Value: 0.000e+0, PID: 79.92 | (lycopene epsilon cyclase, chloroplastic isoform X... [more] |
| A0A061GLV2 | E-Value: 0.000e+0, PID: 80.26 | (Lycopene beta/epsilon cyclase protein {ECO:000031... [more] |
| A0A067KCI7 | E-Value: 0.000e+0, PID: 79.96 | (Uncharacterized protein {ECO:0000313|EMBL:KDP3384... [more] |
| A0A7J7G232 | E-Value: 0.000e+0, PID: 79.32 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5934... [more] |
| A0A6J0ZNX0 | E-Value: 0.000e+0, PID: 80.53 | (lycopene epsilon cyclase, chloroplastic {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |