Resource Type:
Polypeptide
Name:
DCAR_028814
Identifier:
DCAR_028814.mRNA-protein
Sequence:
MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFS
ERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVAD
GYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVV
FFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLC
AGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPT
GSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFK
FLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFG
ICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKL
LVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDP
IKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLY
LSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIV
AVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA*
Sequence Length:
592
Sequence Checksum:
fd742bc4137c0dbaee736014eb70d3f4
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_028814, derives from mRNA, DCAR_028814. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZF73 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8516366.1}))
HSP 1 Score: 905.59 bits (2339), Expect = 0.000e+0
Identity = 424/591 (71.74%), Postives = 510/591 (86.29%), Query Frame = 0
Match: A0A5J4ZF73 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8516366.1}))
HSP 1 Score: 905.59 bits (2339), Expect = 0.000e+0
Identity = 424/591 (71.74%), Postives = 510/591 (86.29%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA 591
M+Q +++E+ D DE+ +V DSS DHKG++PLRASTG W+AS FII+IEFSERLSYFGIATSLI+YLTKVIHQDLKTAAKSVN WSGVTT MPLLGGF+AD YLG+F VLVSSV+Y LGL+LLTMSR++PS +PC ++ C + R++HEVVFFLAIYLIS+GTGGHKPSLESFGA+QFDDDH +ERRKK+SFFNWWN GLC+GL + VT+IVY+QD+ WGV+ +ILT +MASTI+IFCAGRPFYR+R+PTGSPLTPML+VLVAA KR LPH S AELYE+P S KT+GRLL HT+ KFLDKAAII + + +Q N W LAT+T+VEEMKLIL MIPIWLT+LPFGICVAQ STFF+KQ +T++R IT FLIPPAS++ L+AIGMI+SV +YDK+LVP LRR T NERG+ ILQRIGIGM+ T TMV+A VERKRL+++ +DP+KGS+SMSVFWLAPQF+IIG+GDGF+LVGLQEYFYDQVPDSMRSLGI LYLSV+G +SF+SS LITVVD +TEK+G+SWFGKDLNSSRLD FYWLLA I AVN+ YV V R+YSYKNVQ+R VA ++S++GDG+ A+A
Sbjct: 1 MEQSKREESVDFDEEKWVCDSSADHKGRVPLRASTGVWRASLFIIAIEFSERLSYFGIATSLILYLTKVIHQDLKTAAKSVNYWSGVTTTMPLLGGFLADAYLGQFSTVLVSSVVYLLGLMLLTMSRLVPSLKPCDTNHCDETRRIHEVVFFLAIYLISIGTGGHKPSLESFGANQFDDDHSKERRKKMSFFNWWNFGLCSGLLLGVTVIVYVQDHAGWGVSYLILTAIMASTIVIFCAGRPFYRYRMPTGSPLTPMLQVLVAAIKKRNLPHPSDPAELYEVPKSQKTQGRLLCHTDRLKFLDKAAIILEDTKNSANQQNPWLLATVTKVEEMKLILNMIPIWLTTLPFGICVAQGSTFFIKQCTTLDREITHGFLIPPASIYSLAAIGMIVSVTIYDKVLVPVLRRVTKNERGIKILQRIGIGMVFTIITMVVAALVERKRLSVLKNDPMKGSMSMSVFWLAPQFIIIGVGDGFTLVGLQEYFYDQVPDSMRSLGIALYLSVIGAASFLSSLLITVVDHITEKSGQSWFGKDLNSSRLDNFYWLLAAITAVNLCIYVWVARQYSYKNVQRRAAVAD-SNSYEGDGVGAMA 590
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U6K8 ((protein NRT1/ PTR FAMILY 5.6 {ECO:0000313|RefSeq:XP_011094926.1}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 423/591 (71.57%), Postives = 505/591 (85.45%), Query Frame = 0
Match: A0A6I9U6K8 ((protein NRT1/ PTR FAMILY 5.6 {ECO:0000313|RefSeq:XP_011094926.1}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 423/591 (71.57%), Postives = 505/591 (85.45%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA 591
M+Q +K+E+ DED +VHDSS+DHKG++PLRASTGAWKAS FII+IEFSERLSYFG+ATSLIIYLTKVIH+DLKTAAK VN WSGVTT+MPLLGGFVAD YLGRF VL+SSVIY LGLL+LTMSR++P +PC IC +PR++HEV FFLAIYLIS+GTGGHKPSLESFGADQFDDDHPEER+KK+SFFNWWN GLC GL + VT+IVYIQ+++SW AD+ILT VMA TI+IFC+GRPFYRFR PTGSPLTP+L+VLVAA AKR LP+ S +LYE+P S +T+ RLLFHT+ KFLDKAAIIE + E Q N WRLAT+T+VEEMKL++ MIPIWLT+LPFGICVAQ STFF+KQ +T++R IT +F+IPPAS++ L+AIGMIISV +YDKLL P LRR TG+ERG+ +LQRIGIGM+ + TMV+A VERKRLN+V +P++GS+SMSVFWLAPQFLIIG+GDGF+LVGLQEYFYDQVPDSMRSLGI LYLSV+G ++F+SS LIT+VD +TEK G+SWFGKDLN+SRLDYFYWLLAGI A NI + V +YSYKNV R AVAD ++GD +EA+A
Sbjct: 1 MEQAKKQESRGGDEDKWVHDSSLDHKGRIPLRASTGAWKASLFIIAIEFSERLSYFGLATSLIIYLTKVIHEDLKTAAKRVNYWSGVTTLMPLLGGFVADAYLGRFSTVLISSVIYLLGLLVLTMSRVVPGLKPCDVGICERPRRIHEVFFFLAIYLISIGTGGHKPSLESFGADQFDDDHPEERKKKMSFFNWWNFGLCCGLLLGVTIIVYIQEHISWAAADVILTAVMAFTILIFCSGRPFYRFRKPTGSPLTPLLQVLVAAIAKRSLPYPSEPDQLYEVPKSDQTQRRLLFHTKKLKFLDKAAIIEDGQDSAEKQ-NPWRLATVTKVEEMKLVVNMIPIWLTTLPFGICVAQASTFFIKQGTTLDRKITRDFMIPPASIYALAAIGMIISVTIYDKLLEPILRRVTGHERGIKVLQRIGIGMIFSVLTMVVAALVERKRLNVVERNPLEGSVSMSVFWLAPQFLIIGIGDGFALVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFLSSLLITLVDHLTEKGGKSWFGKDLNTSRLDYFYWLLAGITAGNICIFAFVASRYSYKNV--RKTTVAVADCYEGDHIEAMA 588
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LEX4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132228.1}))
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 415/574 (72.30%), Postives = 496/574 (86.41%), Query Frame = 0
Match: A0A834LEX4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132228.1}))
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 415/574 (72.30%), Postives = 496/574 (86.41%), Query Frame = 0
Query: 17 YVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
+V+DSS+DHKG++PLRA+TG WKAS FII+IEFSERLSYFGIATSLIIYLTKV+HQDLKTAAK+VN W+GVTTIMPLLGGF+AD YLGRF VL SS++Y LGL+LLTMSR++P+ RPC S C +PRK+HEV FFLAIYLIS+GTGGHKPSLESFGADQFDDDH EERRKK+SFFNWWN GLC+GL + VT++VY+QD+VSW VADIILT VMAS++++FC GRPFYR+R P GSPLTPM++VLVAAFAKR L S+ ++LYE+P S KT GRLL+HT+ KFLDKAAI+E N + E Q N WRLAT+++VEEMKLIL MIPIWLT+LPFGICVAQ STFF+KQ +T++R I +F+IPPAS++ L+AIGMIISV Y+K+LVPFLR TGNERG+ ILQRIGIGM+ + TMV+A VE+KRL LV +DP KGS +MSVFWLAPQFLIIG GDGF+LVGLQE+FYDQVPDSMRSLGI LYLSV+GV++FISS+LIT+VD +TE+ G+SWFGKDLNSSRLD FYWLLA I VN+ YV + R+Y+YKNVQ R DV AVAD +KGDG+ A+
Sbjct: 7 WVYDSSLDHKGRVPLRATTGVWKASLFIIAIEFSERLSYFGIATSLIIYLTKVMHQDLKTAAKNVNYWTGVTTIMPLLGGFLADAYLGRFTTVLASSIVYLLGLILLTMSRLVPNLRPCDSSTCLEPRKIHEVFFFLAIYLISIGTGGHKPSLESFGADQFDDDHSEERRKKMSFFNWWNFGLCSGLLLGVTVVVYVQDHVSWAVADIILTIVMASSLVVFCIGRPFYRYRKPPGSPLTPMVQVLVAAFAKRNLACPSNPSQLYEVPKSQKTEGRLLWHTDKLKFLDKAAILEDNQSSGEKQQNPWRLATVSQVEEMKLILNMIPIWLTTLPFGICVAQASTFFIKQGTTLDRKIGHSFIIPPASIYSLAAIGMIISVITYEKILVPFLRTTTGNERGIKILQRIGIGMVFSVLTMVVAALVEKKRLTLVENDPTKGSSTMSVFWLAPQFLIIGFGDGFALVGLQEFFYDQVPDSMRSLGIALYLSVIGVANFISSWLITIVDTITEEKGKSWFGKDLNSSRLDNFYWLLAAITTVNLGVYVVLARRYAYKNVQGR-DVVAVADCYKGDGVGAV 579
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2YM72 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHT70830.1}))
HSP 1 Score: 880.552 bits (2274), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
Match: A0A2G2YM72 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHT70830.1}))
HSP 1 Score: 880.552 bits (2274), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
M+QI+K E+ D+DE V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF VL+SS IYFLGLLLLTMSR+IP +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R TGSP PML VLVAA KR L S+ + L+++P S T+ RLL HT+ KFLDKAAI++ ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ TMNR I NF IPPAS++ L+A+GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+ YV V R Y+YKNV R + VAD GD E +
Sbjct: 8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHKNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNRETM 596
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2VUK5 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHT36632.1}))
HSP 1 Score: 880.552 bits (2274), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
Match: A0A2G2VUK5 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHT36632.1}))
HSP 1 Score: 880.552 bits (2274), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
M+QI+K E+ D+DE V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF VL+SS IYFLGLLLLTMSR+IP +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R TGSP PML VLVAA KR L S+ + L+++P S T+ RLL HT+ KFLDKAAI++ ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ TMNR I NF IPPAS++ L+A+GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+ YV V R Y+YKNV R + VAD GD E +
Sbjct: 8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHKNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNRETM 596
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8EIT1 ((protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|RefSeq:XP_016543240.1}))
HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
Match: A0A1U8EIT1 ((protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|RefSeq:XP_016543240.1}))
HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
M+QI+K E+ D+DE V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF VL+SS IYFLGLLLLTMSR+IP +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R TGSP PML VLVAA KR L S+ + L+++P S T+ RLL HT+ KFLDKAAI++ ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ TMNR I NF IPPAS++ L+A+GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+ YV V R Y+YKNV R + VAD GD E +
Sbjct: 8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHRNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNRETM 596
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3BFU5 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHU05354.1}))
HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 415/590 (70.34%), Postives = 495/590 (83.90%), Query Frame = 0
Match: A0A2G3BFU5 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHU05354.1}))
HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 415/590 (70.34%), Postives = 495/590 (83.90%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
M+QI+K E+ D+DE V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF VL+SS IYFLGLLLLTMSR+IP +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R TGSP PML VLVAA KR L S+ + L+++P S T+ RLL HT+ KFLDKAAI++ ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ TMNR I NF IPPAS++ L+++GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+ YV V R Y+YKNV R + VAD GD E +
Sbjct: 8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTSVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHKNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNCETM 596
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KJI1 ((Protein nrt1 ptr family 5.7 {ECO:0000313|EMBL:OIT28849.1}))
HSP 1 Score: 877.856 bits (2267), Expect = 0.000e+0
Identity = 413/590 (70.00%), Postives = 496/590 (84.07%), Query Frame = 0
Match: A0A314KJI1 ((Protein nrt1 ptr family 5.7 {ECO:0000313|EMBL:OIT28849.1}))
HSP 1 Score: 877.856 bits (2267), Expect = 0.000e+0
Identity = 413/590 (70.00%), Postives = 496/590 (84.07%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
++Q+ K E+ ++D +V+DSSVDHKG++PLR STG WKAS FII+IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN WSGVTT+MPLLGGF+AD YLGRF VLVSS +YFLGLLLLTMSR++PS +PC S++C +PRKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++PEERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +ADIILT VMAS+I IF AGRP YR+R TGSP TPML+VLVAA KR L S+ + L+E+P S T+ +LL HT KFLDKAAI++ ++E Q NAW+LAT+T+VEE+KL++ MIPIWLT+LPFGICVAQ +TFF+KQ TMNR I NF IPPAS++ L+A+GMIISV +YDK+LVPF+RRATG+ERG+SILQRIGIGM+ + +TMV+A VERKRLN+VH +P +GS SMSVFWLAPQFLIIG+GDGF+LVGLQEYFYDQVPD+MRSLGI LYLSV+G ++FISS LIT+VD +TE +G+SWFGKDLNSS LDYFYWLLA I AVN+ Y V R Y+YKNV + AVAD GD +A+
Sbjct: 8 IEQVMKAESVEIDGGKWVYDSSVDHKGRVPLRDSTGVWKASLFIIAIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWSGVTTLMPLLGGFLADAYLGRFSTVLVSSTVYFLGLLLLTMSRVVPSLKPCDSNLCDEPRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPEERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADIILTVVMASSIAIFIAGRPSYRYRKATGSPFTPMLQVLVAAIRKRNLHLPSNPSHLHEVPKSETTQRKLLGHTTKLKFLDKAAILDHTQDSIEQQQNAWKLATVTKVEELKLLINMIPIWLTTLPFGICVAQAATFFIKQGMTMNRKIIHNFEIPPASIYALTAVGMIISVTIYDKILVPFMRRATGSERGISILQRIGIGMIFSVSTMVVAALVERKRLNVVHKNPFEGSASMSVFWLAPQFLIIGIGDGFTLVGLQEYFYDQVPDTMRSLGIALYLSVIGAANFISSLLITIVDHITENSGKSWFGKDLNSSHLDYFYWLLATITAVNLCVYAFVARSYTYKNVHSMTTM-AVADCDDGDNHKAM 596
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438JAM0 ((Protein NRT1/ PTR family 5.6 {ECO:0000313|EMBL:RVX05943.1}))
HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 408/588 (69.39%), Postives = 498/588 (84.69%), Query Frame = 0
Match: A0A438JAM0 ((Protein NRT1/ PTR family 5.6 {ECO:0000313|EMBL:RVX05943.1}))
HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 408/588 (69.39%), Postives = 498/588 (84.69%), Query Frame = 0
Query: 4 IQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA 591
+Q++E ++DE +V+DSSVDHKG+LPLRASTG WKAS FII+IEFSERLSYFGIATSLI+YL+KV+H+DLK+AAKSVN WSGVTT MPLLGGF+AD Y GRF VL+SS++Y LGL+LLTMSR++PS RPC + C +PRKVHEVVFFLAIYLIS+GTGGHKP+LESFGADQFDDD+ EER+KK+S+FNWWN GLC+GL + VT+IVY+QD+VSWGVADIIL+ VMA TI+IFC GRPFYR+R P GSPLTP+L+VLVAA AKRKLP+ + ++LYE+P + KT+ R L HTE KFLDKAAI+E N + E Q ++WRLAT+T VEEMKLIL MIPIWL+ LPFGICVAQ STFF+KQ +TMNR I ++FLIP AS++ L+AIGMI SV +Y+K+LVP LR+ATG ERG+ ILQRIGIGM+ + M++A VE+KRL +V +P GSLSMSVFWLAPQF+I+G+GDGFSLVGLQEYFYDQVPDSMRSLGI YLSV+G ++F+SS LIT+VD VTEK G+SWFG DLN+SRLD FYWLLA + +N+ YV V R+YSYKNVQ+R V AVAD + GDG+ ++A
Sbjct: 2 VQRQEG-EVDEKTWVYDSSVDHKGRLPLRASTGVWKASLFIIAIEFSERLSYFGIATSLILYLSKVMHEDLKSAAKSVNYWSGVTTTMPLLGGFLADAYWGRFSTVLISSIVYLLGLILLTMSRVVPSLRPCGAGTCLEPRKVHEVVFFLAIYLISIGTGGHKPALESFGADQFDDDYSEERKKKMSYFNWWNFGLCSGLLIGVTVIVYVQDHVSWGVADIILSVVMAVTIVIFCVGRPFYRYRKPMGSPLTPLLQVLVAAIAKRKLPYPPNPSQLYEVPTAKKTQERFLCHTEKLKFLDKAAILEDNGDSAEKQQSSWRLATVTNVEEMKLILNMIPIWLSCLPFGICVAQASTFFIKQGATMNRKIDNDFLIPAASIYSLAAIGMIASVTIYEKILVPVLRQATGTERGIKILQRIGIGMVFSMIAMIVAALVEKKRLGVVEKNPQTGSLSMSVFWLAPQFVILGIGDGFSLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSLLITIVDHVTEKHGKSWFGVDLNTSRLDKFYWLLAIMNMLNLWVYVIVARRYSYKNVQRRAAV-AVADCYNGDGVGSMA 587
BLAST of DCAR_028814 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CNZ0 ((protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|RefSeq:XP_016502771.1}))
HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 411/590 (69.66%), Postives = 495/590 (83.90%), Query Frame = 0
Match: A0A1S4CNZ0 ((protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|RefSeq:XP_016502771.1}))
HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 411/590 (69.66%), Postives = 495/590 (83.90%), Query Frame = 0
Query: 1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
++Q+ K E+ ++D + +V+DSSVDHKG++PLR STG WKAS FII+IEFSERLSYFGIATSLIIYLTKVIHQDLKTAA SVN WSGVTT+MPLLGGF+AD YLGRF VLVSS +YFLGLLLLTMSR++PS +PC S++C + +KVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++PEERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +ADIILT VMAS+I IF AGR YR+R TGSPLTPML+VL+AA KR L S+ + L+E+P S T+ +LL HT KFLDKAAI++ ++E Q NAW+LAT+T+VEE+KL++ MIPIWLT+LPFGICVAQ +TFF+KQ TMNR I NF IPPAS++ L+A+GMIISV +YDK+LVPF+RRATGNERG+SILQRIGIGM+ + +TMV+A VERKRLN+VH + GS SMSVFWLAPQFLIIG+GDGF+LVGLQEYFYDQVPD+MRSLGI LYLSV+G ++FISS LIT+VD +TE +G+SWFGKDLNSSRLDYFYWLLA I AVN+ YV V R Y+YKNV + AVAD GD +A+
Sbjct: 8 IEQVMKAESVEIDGEKWVYDSSVDHKGRVPLRDSTGVWKASLFIIAIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAISVNYWSGVTTLMPLLGGFLADAYLGRFSTVLVSSTVYFLGLLLLTMSRVVPSLKPCDSNLCDESKKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPEERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADIILTVVMASSIAIFVAGRSSYRYRKTTGSPLTPMLQVLIAAIRKRNLHLPSNPSHLHEVPKSETTQRKLLGHTTKLKFLDKAAILDHTQDSIEQQQNAWKLATVTKVEELKLLINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIISVTIYDKILVPFMRRATGNERGISILQRIGIGMIFSVSTMVVAALVERKRLNVVHKNLFAGSASMSVFWLAPQFLIIGIGDGFTLVGLQEYFYDQVPDTMRSLGIALYLSVIGAANFISSLLITIVDHITENSGKSWFGKDLNSSRLDYFYWLLATITAVNLCVYVFVARSYTYKNVHSMTTM-AVADCDDGDNRKAM 596
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4ZF73 | E-Value: 0.000e+0, PID: 71.74 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8516... [more] |
| A0A6I9U6K8 | E-Value: 0.000e+0, PID: 71.57 | (protein NRT1/ PTR FAMILY 5.6 {ECO:0000313|RefSeq:... [more] |
| A0A834LEX4 | E-Value: 0.000e+0, PID: 72.30 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more] |
| A0A2G2YM72 | E-Value: 0.000e+0, PID: 70.51 | (Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PH... [more] |
| A0A2G2VUK5 | E-Value: 0.000e+0, PID: 70.51 | (Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PH... [more] |
| A0A1U8EIT1 | E-Value: 0.000e+0, PID: 70.51 | (protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|Re... [more] |
| A0A2G3BFU5 | E-Value: 0.000e+0, PID: 70.34 | (Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PH... [more] |
| A0A314KJI1 | E-Value: 0.000e+0, PID: 70.00 | (Protein nrt1 ptr family 5.7 {ECO:0000313|EMBL:OIT... [more] |
| A0A438JAM0 | E-Value: 0.000e+0, PID: 69.39 | (Protein NRT1/ PTR family 5.6 {ECO:0000313|EMBL:RV... [more] |
| A0A1S4CNZ0 | E-Value: 0.000e+0, PID: 69.66 | (protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|Re... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |