Resource Type:
Polypeptide
Name:
DCAR_026720
Identifier:
DCAR_026720.mRNA-protein
Sequence:
MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVPVE
FSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISE
GLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKL
EQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGK
RNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKV
DTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIE
PTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVP
DLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQ
SMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTS
MAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNM
GQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGM
GPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSG
QRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVG
KADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGML
FPGGRQMASQGQVTSQGPPSMPGGGSYLS*
Sequence Length:
730
Sequence Checksum:
d8d1e93d82135a35ffc4ec206e869319
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_026720, derives from mRNA, DCAR_026720. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ANN6 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 994.186 bits (2569), Expect = 0.000e+0
Identity = 510/707 (72.14%), Postives = 577/707 (81.61%), Query Frame = 0
Match: A0A5J5ANN6 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 994.186 bits (2569), Expect = 0.000e+0
Identity = 510/707 (72.14%), Postives = 577/707 (81.61%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPI---IVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MA+KQL+V VEGTAA+GP WQ+I +YL ++++FCG + QKPS +E SLVVFNA G+YSACLVQRSGWT+DVD F QWLSA+ F+GGGF+D AI+EGLAEALMM + +NG Q NVD QRHCILVAASNP+PLPTPV+RPQ+ LEQ EN E+Q ES +SDAE++AK F Q SVSLSVI PKQLPKL+AIY+AGKRN RAADPP+DNVK+P+ LVLISENF+EARAALSR G+ SN SP+K+D SV P VS P TS+PS NGS+MNRQPI VGN+TP VK+EP+TVTSM SGPA+PH+SSVPRA SQGVP+LQTSSP+SA QEMI + V DLKP V+G+SQ LRP GPAAANVSILN+LSQARQVMNSAAL GGTSIGL SMGG MAMHMSNMISSGM SSVP QTVLSSGQSG+TS+ AG+G LAG QVA N+ GSF SAS+N+S NSN G+SQPMGN QGG +MGQSV + Q NI TQM Q+GIGMN NMISG+ SG+SS GTM+PTPGM Q Q G SLG+ NN+AANM +P Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG
Sbjct: 1 MAKKQLVVAVEGTAALGPFWQSISGDYLVDIVRTFCGNELAGQKPSAANIELSLVVFNAHGSYSACLVQRSGWTKDVDIFLQWLSALPFAGGGFNDAAIAEGLAEALMMFSTINGSQTQLNVDGQRHCILVAASNPYPLPTPVYRPQMQNLEQGENIETQSESCLSDAESVAKSFSQCSVSLSVICPKQLPKLRAIYSAGKRNARAADPPVDNVKNPHFLVLISENFMEARAALSRPGVTNFASNPSPVKMDIASV------PT--VSGPPSTSIPSVNGSIMNRQPISVGTVGNITPATVKVEPSTVTSMPSGPAFPHISSVPRATSQGVPSLQTSSPISASQEMISNNDNVQDLKPTVSGMSQSLRPGGPAAANVSILNSLSQARQVMNSAALTGGTSIGLSSMGGASMAMHMSNMISSGMASSVPAAQTVLSSGQSGITSV-----------AGSGTLAGTVQVAQNSAPGSFTSASNNVSANSNPGISQPMGNLQGGASMGQSVSAMGQGNIPGTQMVQSGIGMNPNMISGLGPSGMSSGTGTMIPTPGMTQQVQGGMPSLGVNNNSAANMSLPQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 686
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ATQ3 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 510/707 (72.14%), Postives = 576/707 (81.47%), Query Frame = 0
HSP 2 Score: 39.2762 bits (90), Expect = 3.039e+0
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 0
Match: A0A5B7ATQ3 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 510/707 (72.14%), Postives = 576/707 (81.47%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPI---IVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MA+KQLIV VEGTAA+GP W +I +YL ++++FCG + T QKPS P +E SLV+FNA G+YSACLVQ+SGWT+DVD F QWLSAI F+GGGF+D AI+EGLAEALMM + +NG Q NVD QRHCILVAASNP+PLPTPV+RPQ+ LEQSEN E+Q ES + DAET+AK F Q SVSLSVI PKQLPKLKAIYNAGKRN R ADPP+DNVK+P+ LVLISENF+EARAALSR G+ SN SP+K+D + V PVS P TS+ S NGS+MNRQPI VGN+TP VK+EP+TVTSMVSGPA+PH+ SVPRA SQGVP+LQTSSP+SA QEMI + V DLKP V+G+SQPLRP GPAAANVSILN+LSQARQ AL+GGTSIGL SMGGT MAMHMSNMISSGMVSSVP QTVLSSGQSG+TS+ AG+G LAG QVA N+ GSF SA+S+L GN N GMSQPMGN QGGV+MGQSV +SQ N+ TQM Q+GIGMN NMISG+ SG+SS GTM+PTPGM Q Q G SLG+ NN+AANM +P Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKA RLIGMLFPG
Sbjct: 1 MAKKQLIVAVEGTAALGPFWHSISADYLGDIVRTFCGNELTGQKPSAPNIELSLVMFNAHGSYSACLVQQSGWTKDVDIFLQWLSAIPFAGGGFNDAAIAEGLAEALMMFSTINGSQTQLNVDGQRHCILVAASNPYPLPTPVYRPQMQNLEQSENIETQTESCLYDAETVAKSFAQSSVSLSVICPKQLPKLKAIYNAGKRNTRVADPPVDNVKNPHFLVLISENFMEARAALSRPGVTSFASNQSPVKMDIAT--------VPPVSGPPSTSITSVNGSIMNRQPISVGTVGNMTPATVKVEPSTVTSMVSGPAFPHIPSVPRATSQGVPSLQTSSPISASQEMISNNDNVQDLKPTVSGMSQPLRPGGPAAANVSILNSLSQARQ-----ALSGGTSIGLPSMGGTSMAMHMSNMISSGMVSSVPAAQTVLSSGQSGITSV-----------AGSGTLAGTVQVAQNSAPGSFTSATSSLPGNPNPGMSQPMGNLQGGVSMGQSVSGMSQGNLPGTQMVQSGIGMNPNMISGLGPSGMSSGTGTMIPTPGMSQQVQQGMPSLGVNNNSAANMSLPQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAYRLIGMLFPG 681
HSP 2 Score: 39.2762 bits (90), Expect = 3.039e+0
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 0
Query: 702 PGGRQMASQGQVTSQGPPSMPGGG 725
P Q+ SQGQV+SQGPPSMPGGG
Sbjct: 787 PSRSQLVSQGQVSSQGPPSMPGGG 810
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVZ0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 986.097 bits (2548), Expect = 0.000e+0
Identity = 510/707 (72.14%), Postives = 576/707 (81.47%), Query Frame = 0
HSP 2 Score: 39.2762 bits (90), Expect = 3.127e+0
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 0
Match: A0A5B7AVZ0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 986.097 bits (2548), Expect = 0.000e+0
Identity = 510/707 (72.14%), Postives = 576/707 (81.47%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPI---IVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MA+KQLIV VEGTAA+GP W +I +YL ++++FCG + T QKPS P +E SLV+FNA G+YSACLVQ+SGWT+DVD F QWLSAI F+GGGF+D AI+EGLAEALMM + +NG Q NVD QRHCILVAASNP+PLPTPV+RPQ+ LEQSEN E+Q ES + DAET+AK F Q SVSLSVI PKQLPKLKAIYNAGKRN R ADPP+DNVK+P+ LVLISENF+EARAALSR G+ SN SP+K+D + V PVS P TS+ S NGS+MNRQPI VGN+TP VK+EP+TVTSMVSGPA+PH+ SVPRA SQGVP+LQTSSP+SA QEMI + V DLKP V+G+SQPLRP GPAAANVSILN+LSQARQ AL+GGTSIGL SMGGT MAMHMSNMISSGMVSSVP QTVLSSGQSG+TS+ AG+G LAG QVA N+ GSF SA+S+L GN N GMSQPMGN QGGV+MGQSV +SQ N+ TQM Q+GIGMN NMISG+ SG+SS GTM+PTPGM Q Q G SLG+ NN+AANM +P Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKA RLIGMLFPG
Sbjct: 1 MAKKQLIVAVEGTAALGPFWHSISADYLGDIVRTFCGNELTGQKPSAPNIELSLVMFNAHGSYSACLVQQSGWTKDVDIFLQWLSAIPFAGGGFNDAAIAEGLAEALMMFSTINGSQTQLNVDGQRHCILVAASNPYPLPTPVYRPQMQNLEQSENIETQTESCLYDAETVAKSFAQSSVSLSVICPKQLPKLKAIYNAGKRNTRVADPPVDNVKNPHFLVLISENFMEARAALSRPGVTSFASNQSPVKMDIAT--------VPPVSGPPSTSITSVNGSIMNRQPISVGTVGNMTPATVKVEPSTVTSMVSGPAFPHIPSVPRATSQGVPSLQTSSPISASQEMISNNDNVQDLKPTVSGMSQPLRPGGPAAANVSILNSLSQARQ-----ALSGGTSIGLPSMGGTSMAMHMSNMISSGMVSSVPAAQTVLSSGQSGITSV-----------AGSGTLAGTVQVAQNSAPGSFTSATSSLPGNPNPGMSQPMGNLQGGVSMGQSVSGMSQGNLPGTQMVQSGIGMNPNMISGLGPSGMSSGTGTMIPTPGMSQQVQQGMPSLGVNNNSAANMSLPQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAYRLIGMLFPG 681
HSP 2 Score: 39.2762 bits (90), Expect = 3.127e+0
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 0
Query: 702 PGGRQMASQGQVTSQGPPSMPGGG 725
P Q+ SQGQV+SQGPPSMPGGG
Sbjct: 766 PSRSQLVSQGQVSSQGPPSMPGGG 789
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PH51 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 962.214 bits (2486), Expect = 0.000e+0
Identity = 494/706 (69.97%), Postives = 574/706 (81.30%), Query Frame = 0
HSP 2 Score: 40.817 bits (94), Expect = 1.204e+0
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 0
Match: A0A2R6PH51 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 962.214 bits (2486), Expect = 0.000e+0
Identity = 494/706 (69.97%), Postives = 574/706 (81.30%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPS--QASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MA+KQLIV +EGTA+MGPHWQ+I+++YLDK+I++FC QK SV VEF+LV FNA G+YSACLVQRSGWTRDVD F QWL+AI F+GGGF+D AI+EGL EA+MM + ++G Q QNV QRHCILVAASNP+PLPTPV+RP + LEQ EN E Q +SR+SDAET+AK F Q SVSLSVI PKQLPKL+AIYNAGKRNPRAADPP+D+VK+P+ LVLISE+F+EARA+LSR GI L S+ SP+K+D SV V P TS+ NGS+ NRQPI VGN+ P VK+EP+TV SMVSGP++PH+ +VPRAASQGVP+LQTSSP+S+ QEMI E V DLKP V+ ++QPLRP+GPAAANV+ILNNLSQARQVMNSAAL GGTSIGLQSMGGT MAMHMSNMISSGM SSVP QTV+SSGQS + S M+G+G+L G AQ A N+ GSF S++SN+S SNLG+SQ +GN Q GV+MGQS P ++Q N+ QM QNGI MN NM+SG+ SG+SS GTMMPTPGM Q QPG QSLG+ N++A N+P+ Q S+ +QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG
Sbjct: 1 MADKQLIVAIEGTASMGPHWQSIVSDYLDKIIRTFCSNKLAGQKSSVSNVEFALVAFNAHGSYSACLVQRSGWTRDVDIFLQWLAAIPFAGGGFNDAAIAEGLGEAIMMFSGVSGSQTQQNVAGQRHCILVAASNPYPLPTPVYRPPLQNLEQGENIEVQTQSRLSDAETVAKSFGQCSVSLSVICPKQLPKLRAIYNAGKRNPRAADPPVDSVKNPFFLVLISEDFMEARASLSRPGITGLASSQSPVKMDIASVPPVSGPPP--------TSILPVNGSITNRQPISVGNIPPATVKVEPSTVGSMVSGPSFPHIPAVPRAASQGVPSLQTSSPMSS-QEMISNNENVQDLKPMVSSMAQPLRPVGPAAANVNILNNLSQARQVMNSAALTGGTSIGLQSMGGTPMAMHMSNMISSGMASSVPAAQTVISSGQSAIPS-----------MSGSGSLTGTAQPAPNSAPGSFTSSASNMSATSNLGISQTLGNLQSGVSMGQSAPGMNQGNLPGAQMVQNGISMNQNMMSGLGPSGMSSGTGTMMPTPGMTQQVQPGMQSLGVNNSSATNIPMSQVQQTSSGLQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 684
HSP 2 Score: 40.817 bits (94), Expect = 1.204e+0
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 0
Query: 702 PGGRQMASQGQVTSQGPPSMPGGG 725
PG Q+ SQGQV+SQGPP+MPGGG
Sbjct: 802 PGRSQLVSQGQVSSQGPPNMPGGG 825
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6BIP3 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.584 bits (2461), Expect = 0.000e+0
Identity = 493/706 (69.83%), Postives = 572/706 (81.02%), Query Frame = 0
HSP 2 Score: 40.0466 bits (92), Expect = 1.953e+0
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 0
Match: A0A6P6BIP3 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.584 bits (2461), Expect = 0.000e+0
Identity = 493/706 (69.83%), Postives = 572/706 (81.02%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MA+KQLIV VEGTAAMGP+WQ ++++YLDK+I+ FC + T QK S VE SLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQI LEQSEN E+Q ESR+SDAET+AK F Q SVSLSVI PK L KLKAIY+AGKRNPRA DPPIDNV++P +LVLISENF+E RAALSR+G+ L +N SP+K+D SV V T P PT VPS NGS+M+RQP+ VGNV VK+EPTT+TSM +GPA+ H+ SVPRA SQ VPTLQTSSP + QE++ + + V +LKP V+G++QPLRP+ PAAANV+ILNNLSQAR VMNSAAL GGTSIGLQSMG + +AMHMSNMISSGM SSVPP QTV SSGQSGMTS + G+GAL G AQV N+ SF SA+SN++GNSN+G+SQPMGN QG V+MGQSVP +SQ N S QM Q+G+GM+ NM SG+ QS +SS G M+PTPGM Q Q G Q+LG+++++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKA RLIGMLFPG
Sbjct: 1 MADKQLIVAVEGTAAMGPYWQIVVSDYLDKIIRCFCSGELTGQKNSTSNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PISPNGNQTQQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQSENVEAQTESRLSDAETVAKSFAQCSVSLSVICPKLLSKLKAIYSAGKRNPRAPDPPIDNVRNPQYLVLISENFMEGRAALSRSGVPSLAANQSPVKMDMASVTSV-TGPA-------PTPVPSVNGSIMSRQPVSVGNVPTATVKVEPTTITSMATGPAFQHIPSVPRAPSQAVPTLQTSSPSTTTQEVMTSGDNVQELKPSVSGMTQPLRPVPPAAANVNILNNLSQAR-VMNSAALTGGTSIGLQSMGQSPVAMHMSNMISSGMASSVPPAQTVFSSGQSGMTS-----------LTGSGALTGTAQVPPNSGLSSFPSATSNVAGNSNIGISQPMGNVQGAVSMGQSVPGMSQGNHSGAQMVQSGVGMSQNM-SGLGQSAVSSGTGIMIPTPGMSQQVQSGMQTLGVSHSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAYRLIGMLFPG 682
HSP 2 Score: 40.0466 bits (92), Expect = 1.953e+0
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 0
Query: 702 PGGRQMASQGQVTSQGPPSMPGGG 725
PG Q+ SQGQVTSQ PP+MPGGG
Sbjct: 865 PGRSQLVSQGQVTSQAPPNMPGGG 888
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3J5Z7 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 493/718 (68.66%), Postives = 573/718 (79.81%), Query Frame = 0
HSP 2 Score: 38.5058 bits (88), Expect = 5.619e+0
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0
Match: A0A1R3J5Z7 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 493/718 (68.66%), Postives = 573/718 (79.81%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCT-PLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASET-------------LAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MAEKQLIV VEGTAAMGP+W T++++YLDK+I+ FC + QK S VE SLV FN G+Y ACLVQRSGWT+DVD F QWLSAI F+GGGF+D AI+EGL+EALMM + NG Q QNVD QRHCILV+ASNP+PLPTPV+RPQI LEQ+EN E+Q ESR+SDAET+AK F Q S+SLSVI PKQL KLKAI++AGKRNPRA DPP+DN ++P LVLISENF+E RAA SR G+ L SN SP+K+D SV V+V PPTSVPSANGS+M RQP+ VG+V VK+EPTT+TSM +GPAYPH+ SVPRA SQ VPTLQTSSP + QE+I + + V ++KP V+G++QPLRP+ P AANV+ILNNLSQAR VMNSAAL GG+SIGLQSMG T +AMHMSNMISSGM SSVPPTQTV S+GQS GMTS+ G+GAL G AQV N+ SFASASSN++GNSN+G+SQPMGN QGGV+MGQSVP +SQ N+S QM Q+G+GM+ NM SG+ S +SS GTM+PTPGM Q Q QSLG++N++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASET LAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWHTVVSDYLDKIIRCFCSGELNGQKTSTSNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFAGGGFNDAAIAEGLSEALMMFSVASNGNQTQQNVDGQRHCILVSASNPYPLPTPVYRPQIQNLEQTENIEAQTESRLSDAETVAKSFGQCSISLSVICPKQLSKLKAIFSAGKRNPRAPDPPVDNSRNPQFLVLISENFMEGRAAFSRPGVPSLPSNQSPVKMDMASVTS--------VTVPPPTSVPSANGSMMARQPVSVGSVPTATVKVEPTTITSMGTGPAYPHIPSVPRAPSQAVPTLQTSSPSTTTQEVITSGDNVQEIKPSVSGMTQPLRPV-PPAANVNILNNLSQAR-VMNSAALTGGSSIGLQSMGQTPVAMHMSNMISSGMASSVPPTQTVFSNGQS-----------GMTSLTGSGALTGTAQVPPNSGLSSFASASSNMAGNSNIGISQPMGNVQGGVSMGQSVPGMSQGNVSGAQMVQSGVGMSQNM-SGLGPSTVSSGTGTMIPTPGMSQQVQSNMQSLGVSNSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETFIEPEDFGFCSFRLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 694
HSP 2 Score: 38.5058 bits (88), Expect = 5.619e+0
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0
Query: 702 PGGRQMASQGQVTSQGPPSMPGGG 725
PG Q+ SQGQV+SQ PP+MPGGG
Sbjct: 866 PGRSQLVSQGQVSSQAPPNMPGGG 889
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6X4W5 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 946.421 bits (2445), Expect = 0.000e+0
Identity = 502/757 (66.31%), Postives = 587/757 (77.54%), Query Frame = 0
Match: A0A5B6X4W5 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 946.421 bits (2445), Expect = 0.000e+0
Identity = 502/757 (66.31%), Postives = 587/757 (77.54%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTS---VPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWE----GNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG---------------------GR-QMASQGQVTSQGPPSMPGGG 725
MAEKQLIV VEGTAAMGP+W ++++YLDK+I+ FC + T QK S VEFSLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQI LEQ E++E+Q ESR+SDAET+A+ F Q SVSLSVI PKQL KLKAIY+AGKRNPRAADPP+DNVK+ LVLISENF+E RAA SR+G+ L +N SP+K+D SV V T P PP+S NGS++ R P+ +GNV VK+EPTT+TSM +GPA+ HV SVPRA SQ +PTLQTSSPL+ QE + + + + +LKP V+G++QP R + PAAANV+ILNNLSQAR VM+SAAL GGTSIGLQSMG T +AMHMSNMISSGM SSVPP TVLSSGQ P MTS+ G+GAL G AQV N+ SF+SA+SN++GNSN+G+SQ MGN QG VN+GQSVP +SQ N S TQM Q+G+GM+ NM S + QS +SS NGTM+PTPGM Q Q G Q+LG++N++AA+MP+ Q S+A+QSA QSKYV+VWE GNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLP QTLLLSVSDKACRLIGMLFPG GR Q+ SQGQV+SQ PP+MPGGG
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVEHSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKRNPRAADPPVDNVKNSQFLVLISENFMEGRAAFSRSGVPSLATNQSPVKMDMASVTSV-TGP-------PPSSGGLCRILNGSMVGRPPVSIGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRTVPPAAANVNILNNLSQAR-VMSSAALTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQ-----------PTMTSLTGSGALTGTAQVPPNSGLSSFSSATSNVAGNSNIGISQSMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNM-SALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSA--QSKYVKVWEEEELGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGQLSQQQQMVGSGMGPAYVQGPGRSQLVSQGQVSSQAPPNMPGGG 733
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4MG19 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 941.414 bits (2432), Expect = 0.000e+0
Identity = 489/706 (69.26%), Postives = 570/706 (80.74%), Query Frame = 0
HSP 2 Score: 38.891 bits (89), Expect = 4.315e+0
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0
Match: A0A6P4MG19 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 941.414 bits (2432), Expect = 0.000e+0
Identity = 489/706 (69.26%), Postives = 570/706 (80.74%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MAEKQLIV VEGTAAMGP+W ++++YLDK+I+ FC + T QK S VEFSLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQI LEQ EN+E+Q ESR+SDAET+A+ F Q SVSLSVI PKQL KLKAIY+AGK+NPRAADPP+DNVK+ LVLISENF+E RAALSR+G+ L +N SP+K+D SV V T P PP+SV NGS++ R P+ VGNV VK+EPTT+TSM +GPA+ HV SVPRA SQ +PTLQTSSPL+ QE + + + + +LKP V+G++QP RP+ PAAANV+ILNNLSQAR VM+SAAL GGTSIGLQSM T +AMHMSNMISSGM SSVPP TVLSSGQ P MTS+ G+GAL G AQV N+ SF+SA+SN++GNSN+G+SQPMGN QG VN+GQSVP +SQ N S TQM Q+G+GM+ NM S + QS +SS NGTM+PTPGM Q Q G Q+LG++N++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLP QTLLLSVSDKACRLIGMLFPG
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKQNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGLPSLATNQSPVKMDMASVTSV-TGP-------PPSSV---NGSMVGRLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQAR-VMSSAALTGGTSIGLQSMVQTPVAMHMSNMISSGMASSVPPAHTVLSSGQ-----------PTMTSLTGSGALTGTAQVLPNSGLSSFSSATSNVAGNSNIGISQPMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNM-SALGQSTVSSGNGTMIPTPGMSQQVQSGMQALGVSNSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPG 679
HSP 2 Score: 38.891 bits (89), Expect = 4.315e+0
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0
Query: 702 PGGRQMASQGQVTSQGPPSMPGGG 725
PG Q+ SQGQV+SQ PP+MPGGG
Sbjct: 791 PGRSQLVSQGQVSSQAPPNMPGGG 814
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UKC2 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 496/706 (70.25%), Postives = 567/706 (80.31%), Query Frame = 0
Match: A0A2C9UKC2 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 496/706 (70.25%), Postives = 567/706 (80.31%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPS-VPVEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMM--CTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MAEKQLIV VEG+AAMGP WQTIL+EYL+K+I+SFCG D T QKPS E SLV F + G+Y ACLVQRSGWTRDVD F QWLSAI F+GGGF+D AI+EGL+EALMM CT NG Q QN++ QRHC+L+AASNP PLPTPV+RPQI LEQSEN + Q ESR+SDAET+AK FPQ SVSLSVI PKQLPK++AIY AGKRN RAADP +DNVK+P+ LVLISENF+EARA+LSR G+A L SN SP+K+D SV S P P+S+PS NGS+MNR P+ VG V VK+EPTTVTSM GPA+PH++SV R ASQ VP+LQTSSP + QEMI + E VPDLKP V+G+ Q +RP+ P ANVSILNNLSQARQVMNSAAL GGT+IGLQS+ T +AMHMSNMISSGM SSVP Q V SSGQ G+TSIA SG QVA N+ GSF SA+SN+SGNSNLG+SQP+ N QGGV+MG SVP +SQ ++S QM Q+GIGMN NM+SG+ SG+SS + TM+PTPG+ Q Q G QSLG+ NN+AANMP+ Q ++A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG
Sbjct: 1 MAEKQLIVAVEGSAAMGPFWQTILSEYLEKMIRSFCGSDLTGQKPSPSNAELSLVTFYSHGSYCACLVQRSGWTRDVDIFLQWLSAIPFAGGGFNDAAIAEGLSEALMMFPCT-QNGSQAQQNIEGQRHCVLIAASNPHPLPTPVYRPQIQNLEQSENIDPQTESRLSDAETVAKSFPQCSVSLSVICPKQLPKIRAIYTAGKRNIRAADPAVDNVKNPHFLVLISENFMEARASLSRPGVANLPSNQSPVKLDVASV----ASAAGPA----PSSIPSVNGSIMNRPPMSVGTVPTATVKVEPTTVTSMAPGPAFPHITSV-RPASQPVPSLQTSSPPTTTQEMIASGENVPDLKPSVSGMQQSVRPVPPGTANVSILNNLSQARQVMNSAALTGGTTIGLQSVTQTPVAMHMSNMISSGMASSVPAAQNVFSSGQPGITSIAGSG---------------TTQVAANSGLGSFTSATSNISGNSNLGISQPISNLQGGVSMGPSVPGMSQGSLSGAQMVQSGIGMNQNMMSGLGPSGVSSGSSTMIPTPGIPQQAQSGMQSLGVNNNSAANMPLSQQTTSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 679
BLAST of DCAR_026720 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4N5F1 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 489/706 (69.26%), Postives = 570/706 (80.74%), Query Frame = 0
HSP 2 Score: 38.891 bits (89), Expect = 4.339e+0
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0
Match: A0A6P4N5F1 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 489/706 (69.26%), Postives = 570/706 (80.74%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPG 703
MAEKQLIV VEGTAAMGP+W ++++YLDK+I+ FC + T QK S VEFSLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQI LEQ EN+E+Q ESR+SDAET+A+ F Q SVSLSVI PKQL KLKAIY+AGK+NPRAADPP+DNVK+ LVLISENF+E RAALSR+G+ L +N SP+K+D SV V T P PP+SV NGS++ R P+ VGNV VK+EPTT+TSM +GPA+ HV SVPRA SQ +PTLQTSSPL+ QE + + + + +LKP V+G++QP RP+ PAAANV+ILNNLSQAR VM+SAAL GGTSIGLQSM T +AMHMSNMISSGM SSVPP TVLSSGQ P MTS+ G+GAL G AQV N+ SF+SA+SN++GNSN+G+SQPMGN QG VN+GQSVP +SQ N S TQM Q+G+GM+ NM S + QS +SS NGTM+PTPGM Q Q G Q+LG++N++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLP QTLLLSVSDKACRLIGMLFPG
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKQNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGLPSLATNQSPVKMDMASVTSV-TGP-------PPSSV---NGSMVGRLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQAR-VMSSAALTGGTSIGLQSMVQTPVAMHMSNMISSGMASSVPPAHTVLSSGQ-----------PTMTSLTGSGALTGTAQVLPNSGLSSFSSATSNVAGNSNIGISQPMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNM-SALGQSTVSSGNGTMIPTPGMSQQVQSGMQALGVSNSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPG 679
HSP 2 Score: 38.891 bits (89), Expect = 4.339e+0
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0
Query: 702 PGGRQMASQGQVTSQGPPSMPGGG 725
PG Q+ SQGQV+SQ PP+MPGGG
Sbjct: 814 PGRSQLVSQGQVSSQAPPNMPGGG 837
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5ANN6 | E-Value: 0.000e+0, PID: 72.14 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A5B7ATQ3 | E-Value: 3.039e+0, PID: 72.14 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A5B7AVZ0 | E-Value: 3.127e+0, PID: 72.14 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A2R6PH51 | E-Value: 1.204e+0, PID: 69.97 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A6P6BIP3 | E-Value: 1.953e+0, PID: 69.83 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A1R3J5Z7 | E-Value: 5.619e+0, PID: 68.66 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A5B6X4W5 | E-Value: 0.000e+0, PID: 66.31 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A6P4MG19 | E-Value: 4.315e+0, PID: 69.26 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A2C9UKC2 | E-Value: 0.000e+0, PID: 70.25 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A6P4N5F1 | E-Value: 4.339e+0, PID: 69.26 | Mediator of RNA polymerase II transcription subuni... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |