Resource Type:
Polypeptide
Name:
DCAR_027121
Identifier:
DCAR_027121.mRNA-protein
Sequence:
MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRR
LPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLID
TMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWT
ITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAG
YDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRF
PAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGH
LEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDY
RWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYT
GSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVA
KWDFSDKSLNQSSETETV*
Sequence Length:
469
Sequence Checksum:
ea987010cee9d0fed42d0e0b32924cde
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027121, derives from mRNA, DCAR_027121. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LTV4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150222.1}))
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 324/428 (75.70%), Postives = 369/428 (86.21%), Query Frame = 0
Match: A0A834LTV4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150222.1}))
HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 324/428 (75.70%), Postives = 369/428 (86.21%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSN-LSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
LDH++AQLT+L+SEP+ +SR GKS+LP+SPV MLA RE+N+SGRGRFSSAD CHVL+RYLPVNGP ID M+S YVSQFS DGSLFVAGFQES IRIYNV+ GWKVQKDI A+SLRWTITDASLSPDQR+LVY+SMSPIVHIVN+GS+ T+S AN+TEIHEGLDFS G D E + +FGIFSVKFS DGRELVAASSD SIY+YDL ANKL++R PAH DVN+VCFADESG++IYSGSDD LCKV DRRC + QA+GVL GHLEG+T IDSRGDGRY ISNGKDQ+IKLWDIRKMSS + NP RN WDYRWM+YP R RN +HPND+SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYD++TGAQVA+L+YH PVRDCSWHP YPTLVSSSWDG +A+W+FS
Sbjct: 33 LDHEVAQLTKLRSEPNGLLSRVGLGKSLLPVSPVMMLAGRESNYSGRGRFSSADTCHVLSRYLPVNGPRKIDQMNSCAYVSQFSADGSLFVAGFQESEIRIYNVNGGWKVQKDILAKSLRWTITDASLSPDQRYLVYASMSPIVHIVNVGSSVTKSHANVTEIHEGLDFSVGDDIEGE----RSFGIFSVKFSTDGRELVAASSDDSIYVYDLAANKLALRIPAHKSDVNSVCFADESGNVIYSGSDDNLCKVWDRRCFVTKGQAAGVLTGHLEGITSIDSRGDGRYFISNGKDQSIKLWDIRKMSSKVICPNPRLRN-DWDYRWMDYPPRARNRKHPNDLSLATYEGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDVVTGAQVARLEYHGDPVRDCSWHPFYPTLVSSSWDGVIAEWEFS 455
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A726 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 318/456 (69.74%), Postives = 380/456 (83.33%), Query Frame = 0
Match: M1A726 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 318/456 (69.74%), Postives = 380/456 (83.33%), Query Frame = 0
Query: 1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSA-GYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
MSR+R FL E + + LDH+I+QLT+++S PH+ M LPGK P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS+ YD+ D+Y FGIFSVKFS DGRELVA SSD+SIY+YDL A +LS++ PAH DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P R+ WDYRWM+YP +RN R+P+D+SLATYKGHSVLRTLIRCYFSPA+STGQK+IYTGS+D SVYIYD+++GAQVAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 1 MSRSRRFLNERARGDGMKLIDERGGTSVLDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCTYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSPTYDY--DNY---TFGIFSVKFSTDGRELVAGSSDSSIYVYDLEAKRLSLQIPAHTSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMDYPEHVRNKRNPHDLSLATYKGHSVLRTLIRCYFSPAHSTGQKFIYTGSSDSSVYIYDVVSGAQVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 451
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A979 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 320/426 (75.12%), Postives = 361/426 (84.74%), Query Frame = 0
Match: A0A5J5A979 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 320/426 (75.12%), Postives = 361/426 (84.74%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 454
LDH+IAQLT+L S PH+ +SR + G SMLP+SPV+MLA RE N+SGRGRFSSAD CHVL+RYLP+ +D MDS YVSQFS DGSLFVAGFQES IR+YNVD+GWKVQKDI+ARSLRWTITD +LSPDQRFLVY+S+SP+VHIVNIGSAATES+ANITEIHEGL FS +DDD Y +FGIFSVKFS DGRELVAA SD SIY+YDL ANKL++R PAH DVN VCFADESGH+IYSGSDD LCKV DRRC QA+GVL+GH+EG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSSN++ N R+ WDYRWM+YP RN RHPND SLATY+GH VLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++G QVA+L YHE VRDCSWHP YPT+VSSSWDG +AKW+F
Sbjct: 33 LDHEIAQLTKLMSGPHERLSRMVTGNSMLPVSPVKMLAGREFNYSGRGRFSSADRCHVLSRYLPIGSALTVDQMDSCAYVSQFSADGSLFVAGFQESRIRVYNVDAGWKVQKDIQARSLRWTITDTTLSPDQRFLVYASISPVVHIVNIGSAATESLANITEIHEGLVFS-----DDDDGEY-SFGIFSVKFSTDGRELVAACSDGSIYVYDLEANKLTLRIPAHTSDVNAVCFADESGHLIYSGSDDNLCKVWDRRCFATKGQAAGVLMGHIEGITFIDSRGDGRYFISNGKDQAIKLWDIRKMSSNVTCNSRLRDHHWDYRWMDYPTEARNLRHPNDQSLATYRGHEVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGTQVARLKYHEDTVRDCSWHPFYPTIVSSSWDGNIAKWEF 452
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LWV9 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 320/449 (71.27%), Postives = 368/449 (81.96%), Query Frame = 0
Match: A0A7N2LWV9 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 320/449 (71.27%), Postives = 368/449 (81.96%), Query Frame = 0
Query: 12 GSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF--SDKS 458
S PS+P N LDH+IA LT+L SEPHK ++R PG+S LPIS V+ML RE N SGRGRFSSADGCHVL+RYLP GP +D M+S Y SQFS DGSLFVAGFQ SHIRIYNV+ GWKVQKDI A+SLRWTITD SLSPDQ++LVY+SMSP+VHIVN+GSAATESVANITEIH+GLDFS D D FGIFSVK+SNDGRELVAASS+ SIY+YDL A +LS++ PAHM DVNTVCFADE+GH++YSGSDD LCKV DRRC I QA+GVL+GHL+G+TF+DSRGDGRYLISNGKDQT KLWDIRKMSS + + P R+ WDYRWMEYP + R RHP D SLATY+GHSVLRTLIRCYFSP YSTGQKYIYTGS+D SVYIYDL++GAQVA+LDYH+ PVRDC+WHP YP ++SSSWDG + KW+F SD+S
Sbjct: 23 ASEGPSQPSNH------LDHEIAHLTKLGSEPHKLLTRTAPGRSKLPISTVKMLVARETNHSGRGRFSSADGCHVLSRYLPTTGPCRVDQMNSRAYTSQFSADGSLFVAGFQGSHIRIYNVNKGWKVQKDILAKSLRWTITDTSLSPDQQYLVYASMSPMVHIVNVGSAATESVANITEIHDGLDFSV-------DDINDEFGIFSVKYSNDGRELVAASSNNSIYVYDLEAKRLSLQIPAHMSDVNTVCFADETGHLLYSGSDDNLCKVWDRRCFITKGQAAGVLMGHLQGITFLDSRGDGRYLISNGKDQTTKLWDIRKMSSTVIY-PKTRDADWDYRWMEYPQKARKLRHPRDQSLATYRGHSVLRTLIRCYFSPTYSTGQKYIYTGSSDSSVYIYDLVSGAQVARLDYHDAPVRDCNWHPVYPMIISSSWDGDIVKWEFPGSDES 457
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RGG1 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 325/439 (74.03%), Postives = 364/439 (82.92%), Query Frame = 0
Match: A0A5N6RGG1 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 325/439 (74.03%), Postives = 364/439 (82.92%), Query Frame = 0
Query: 16 PSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 454
PS+P N LDH+IAQLT+L+S P + R PG+ LPIS +ML RE N SGRGRFSSADGCHVL+RYLPVNG +D M S YVSQFS DGSLFVAGFQESHI+IYNV+ GWKVQKDI A+SLRWTITD SLSPDQ +LVY+SMSPIVH+VN+GSAATESVANITEIH+GLDFS D DD+ FGIFSVKFSNDGRELVAASS+ SIY+YDL A KLS++ PAHM DVNTVCFADESGH++YSGSDD LCKV DRRC I QA+GVL+GHLEG+TFIDSRGDGRYLISNGKDQTIKLWDIRKMSS + P R WDYRWMEYP R +HP+D SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++GAQVA+LDYHE PVRDCSWHP YPT++SSSWDG +AKW+F
Sbjct: 27 PSKPSNY------LDHEIAQLTKLRSMPQGLLGREGPGRLRLPISTFKMLVGREGNHSGRGRFSSADGCHVLSRYLPVNGAFRVDRMKSRAYVSQFSADGSLFVAGFQESHIKIYNVNGGWKVQKDILAKSLRWTITDTSLSPDQHYLVYASMSPIVHVVNVGSAATESVANITEIHDGLDFSV--DNSDDE-----FGIFSVKFSNDGRELVAASSNNSIYVYDLEARKLSLQIPAHMSDVNTVCFADESGHLLYSGSDDNLCKVWDRRCFITKGQAAGVLMGHLEGITFIDSRGDGRYLISNGKDQTIKLWDIRKMSSTAMY-PRLREGNWDYRWMEYPPHARTLKHPHDQSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGAQVARLDYHEAPVRDCSWHPLYPTMISSSWDGDIAKWEF 451
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VN90 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 320/426 (75.12%), Postives = 361/426 (84.74%), Query Frame = 0
Match: A0A6A1VN90 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 320/426 (75.12%), Postives = 361/426 (84.74%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 454
LDH+IAQLT+L+S PH+ +SR +PG+ +PIS V+ML RE N+SGRGRFSSAD CH+L+RYLPVNGP +D M S YVSQFS DGSLFVAGFQ SHIRIYNVD GWKVQK+I A+SLRWTITD SLSPD +LVYSSMSPI+HIVN+GS TES+ANITEIH+GLDFS DDD YD FGIFSVKFSNDGRELVAASS+ SIY+YDL A KL +R PAHM DVNTVCFAD++GH+IYSGSDD CKV DRRC I QA+GVL+GHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSN + P R+ WDYRWMEYP R R RHP D SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++GA+VA+LD+H+ PVRDCSWHP YP L+SSSWDG +AKW+F
Sbjct: 33 LDHEIAQLTKLRSGPHELLSRAVPGRLRVPISTVKMLVAREGNYSGRGRFSSADSCHILSRYLPVNGPFKVDRMKSRAYVSQFSADGSLFVAGFQGSHIRIYNVDGGWKVQKNILAKSLRWTITDTSLSPDLHYLVYSSMSPIIHIVNVGSPGTESLANITEIHDGLDFSV-----DDD--YDEFGIFSVKFSNDGRELVAASSNNSIYVYDLEAKKLCLRIPAHMSDVNTVCFADDTGHLIYSGSDDNFCKVWDRRCFITKGQAAGVLMGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNAMY-PRLRDDDWDYRWMEYPPRSRTLRHPWDQSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGAEVARLDHHDAPVRDCSWHPFYPMLISSSWDGDIAKWEF 450
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7A7V0 ((Uncharacterized protein {ECO:0000313|EMBL:KZV14942.1}))
HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 311/428 (72.66%), Postives = 368/428 (85.98%), Query Frame = 0
Match: A0A2Z7A7V0 ((Uncharacterized protein {ECO:0000313|EMBL:KZV14942.1}))
HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 311/428 (72.66%), Postives = 368/428 (85.98%), Query Frame = 0
Query: 30 DHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFSDK 457
D +I+QLT++KS PH ++SR +PGK+ LPISPV+ML RE N++GRGRFS +DGCHVL+RYLPVNGPS++DT+ S YVSQFS DGSLF+AGFQ+SHIRIY+VD GWK+ KDI+ARSLRWTITDASLSPD+RFLVYSS+SPI HIVN+ SA ES+AN+TEIHEGL+FS+ D DDY +FGIFSVKFSNDGRELVAASSD SIY+YDL + +L++R AHM DVN VCFADESGHIIYSGSDD LCKV DRRC +N QA+GVL+GHLEG+TFID+RGDGRY ISNGKDQ+IKLWDIRKMSS++++ +R WDYRWMEYP R + RHP+D+SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS D SVYIYDL+ G QVAKLD+H+ PVRDC+WHP+YP +VSSSWDG +A W+F K
Sbjct: 30 DDEISQLTKIKSTPHGHLSRTVPGKAKLPISPVKMLLGRECNYNGRGRFSLSDGCHVLSRYLPVNGPSVVDTIRSCTYVSQFSTDGSLFIAGFQDSHIRIYDVDLGWKIHKDIQARSLRWTITDASLSPDRRFLVYSSISPIAHIVNVESATKESLANVTEIHEGLEFSSNVD-NYDDY---SFGIFSVKFSNDGRELVAASSDQSIYVYDLASKRLNLRIQAHMSDVNAVCFADESGHIIYSGSDDHLCKVWDRRCFVNRGQAAGVLIGHLEGITFIDTRGDGRYFISNGKDQSIKLWDIRKMSSDVNYTSRRRYADWDYRWMEYPERAKKLRHPDDLSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSTDGSVYIYDLVNGDQVAKLDFHDDPVRDCNWHPSYPMIVSSSWDGIIANWEFPGK 453
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7F1N4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g080690.3.1}))
HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 315/455 (69.23%), Postives = 375/455 (82.42%), Query Frame = 0
Match: A0A3Q7F1N4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g080690.3.1}))
HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 315/455 (69.23%), Postives = 375/455 (82.42%), Query Frame = 0
Query: 1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
MSR+R FL E + + + LDH+I+QLT+++S PH+ M LPGK P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS + D D Y FGIFSVKFS DGRELVA SD SIY+YDL A +LS+R PAHM DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P R+ WDYRWM YP +RN R+P+D+SL+TYKGHSVLRTLIRCYFSPA+STGQK+IY GS+D SVYIYD+++GA+VAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 1 MSRSRRFLNERARGDGMKLIDEGGTSV-LDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFS--FPTYDHDNY--TFGIFSVKFSTDGRELVAGCSDNSIYVYDLEAKRLSLRIPAHMSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMGYPEHVRNKRNPHDLSLSTYKGHSVLRTLIRCYFSPAHSTGQKFIYAGSSDSSVYIYDVVSGARVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 450
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IHW5 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0
Identity = 308/428 (71.96%), Postives = 368/428 (85.98%), Query Frame = 0
Match: A0A0V0IHW5 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0
Identity = 308/428 (71.96%), Postives = 368/428 (85.98%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSA-GYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
LDH+I+QLT+++S PH+ M LPGK P+S V+MLA RE N++GRGRFS +D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS+ YD+ D+Y FGIFSVKFS DGRELVA SSD+SIY+YDL A +LS++ PAH DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P R+ WDYRWM+YP +RN ++P+D+SLATYKGHSVLRTLIRCYFSP +STGQK+IYTGS+D SVYIYD+++GAQVAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 29 LDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSXSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSPTYDY--DNY---TFGIFSVKFSTDGRELVAGSSDSSIYVYDLEAKRLSLQIPAHTSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMDYPEHVRNKKNPHDLSLATYKGHSVLRTLIRCYFSPTHSTGQKFIYTGSSDSSVYIYDVVSGAQVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 451
BLAST of DCAR_027121 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BHB3 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 660.603 bits (1703), Expect = 0.000e+0
Identity = 313/455 (68.79%), Postives = 377/455 (82.86%), Query Frame = 0
Match: A0A6N2BHB3 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 660.603 bits (1703), Expect = 0.000e+0
Identity = 313/455 (68.79%), Postives = 377/455 (82.86%), Query Frame = 0
Query: 1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
MSR+R FL E + + + LDH+I+QLT+++S PH+ M LP K P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS+ ++ D+Y FGIFSVKFS DGRELVA SD+SIY+YDL A +LS+R PAHM DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P R+ WDYRWM YP +RN R+P+D+SL+TYKGHSVLRTLIRCYFSPA+STGQK+IY GS+D SVYIYD+++GA+VAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 1 MSRSRRFLNERARGDGMKLIDEGGTSV-LDHEISQLTKIRSNPHERMRHLLPCKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSP-TYDHDNY---TFGIFSVKFSTDGRELVAGCSDSSIYVYDLEAKRLSLRIPAHMSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMGYPEHVRNKRNPHDLSLSTYKGHSVLRTLIRCYFSPAHSTGQKFIYAGSSDSSVYIYDVVSGARVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 450
| Match Name | Stats | Description |
|---|---|---|
| A0A834LTV4 | E-Value: 0.000e+0, PID: 75.70 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7150... [more] |
| M1A726 | E-Value: 0.000e+0, PID: 69.74 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A5J5A979 | E-Value: 0.000e+0, PID: 75.12 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A7N2LWV9 | E-Value: 0.000e+0, PID: 71.27 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A5N6RGG1 | E-Value: 0.000e+0, PID: 74.03 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A6A1VN90 | E-Value: 0.000e+0, PID: 75.12 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A2Z7A7V0 | E-Value: 0.000e+0, PID: 72.66 | (Uncharacterized protein {ECO:0000313|EMBL:KZV1494... [more] |
| A0A3Q7F1N4 | E-Value: 0.000e+0, PID: 69.23 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A0V0IHW5 | E-Value: 0.000e+0, PID: 71.96 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A6N2BHB3 | E-Value: 0.000e+0, PID: 68.79 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |