Resource Type:
Polypeptide
Name:
DCAR_014610
Identifier:
DCAR_014610.mRNA-protein
Sequence:
MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPANSTPSSS
SSSPIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGI
AENRLSLDLIETWLLQNSNDSLLQGGLTIGGLATYQPFDGLMDMKVAMSG
FVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPG
FDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLI
SNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMA
EILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRF
CSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIEC
AKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIE
PGWFRCCFTTLQENDIPIVMGRIQKITPIGTSQTGIP*
Sequence Length:
488
Sequence Checksum:
f0c2c3209cebd3d7508c6b3224f17b82
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_014610, derives from mRNA, DCAR_014610. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BUT0 ((Putative Aminotransferase, class I/classII {ECO:0000313|EMBL:MPA70873.1}) (Fragment))
HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 341/492 (69.31%), Postives = 405/492 (82.32%), Query Frame = 0
Match: A0A5B7BUT0 ((Putative Aminotransferase, class I/classII {ECO:0000313|EMBL:MPA70873.1}) (Fragment))
HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 341/492 (69.31%), Postives = 405/492 (82.32%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRS-------------PANSTPSSSSSSPIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQGG---LTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKI 476
MRL+VPLQG +V GRGG+VLGSL+PCALFYFLQF+LKRHRS + + S+ S + +SSRA I K N+SPYYIG++ V D Y L++P+GII LG++ENRLSLDLIE WL +N NDS+L GG L+I G+ATYQPFDGL D+KVA++GF+S+V+GG +S NPS+LVLTSGATPAVEILCFCLAD G+AFL+P PYYPGFDRD+ +RTGVELIPVHC SSD F LS L+Q FNQARKRG+++RG+LISNPSNPVGN+L R+ L +LL FA EKNIHIISDE+FAGS YG+EEFVSMAEIL ++DF+K+RVH+IYGLSKD SLPG+RVG IYS NENVL ASK+LTRF SIS PTQ+LLISMLSD RF Q+YI+ NRER+ MYDLFV GLKQLGI+C KSSGGLYCW +MSGLI +EKGEL LW KLLNIAKIN+TPG+ACHCIEPGWFRCCFTTL E DIP+V+ RI+K+
Sbjct: 66 MRLIVPLQG-VVQGRGGIVLGSLIPCALFYFLQFYLKRHRSSPPSPSSLAELQRTTSRSNLSTRGSIGQVHISSRADSIVKSNDSPYYIGLERVSEDAYDELKNPNGIIQLGLSENRLSLDLIEQWLSRNLNDSILGGGGDGLSISGIATYQPFDGLWDLKVAVAGFMSQVMGGAVSFNPSRLVLTSGATPAVEILCFCLADQGNAFLVPTPYYPGFDRDMRWRTGVELIPVHCRSSDNFTLSITALDQAFNQARKRGQKVRGILISNPSNPVGNLLTRDTLCDLLNFAREKNIHIISDEIFAGSTYGSEEFVSMAEILDTQDFDKDRVHLIYGLSKDFSLPGFRVGVIYSLNENVLTASKRLTRFSSISVPTQRLLISMLSDTRFTQEYIETNRERIRTMYDLFVAGLKQLGIQCTKSSGGLYCWASMSGLIRPYNEKGELELWEKLLNIAKINVTPGAACHCIEPGWFRCCFTTLAEKDIPVVIERIRKV 556
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AWF4 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0
Identity = 346/503 (68.79%), Postives = 408/503 (81.11%), Query Frame = 0
Match: A0A5J5AWF4 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0
Identity = 346/503 (68.79%), Postives = 408/503 (81.11%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPANST--PSSSSSSPI-------------------RAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQGG---LTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPG-----FDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQ 474
MRL+VPLQG +V GRGG+VLGSL+PCALFYFLQF+LKRHRS S+ P+S SSS + +A +SSRA+ IAK ++SPYYIG++ V D Y L++P+GII LG++ENRLSLDLIE WL +N NDS+L GG L+I G+ATYQPFDGL ++KVA++ F+S V+GG +S NPSQLVLTSGATPAVEILCFCLAD G+AFL+P PYYPG FDRD+ +RTGVELIPVHC SSD F LS L+Q FNQARKRG++IRG+LISNPSNPVGN+L R+ L NLL FA EKNIHIISDE+FAGS +G+EEFVSMAEI+ SEDF+K+RVH+IYGLSKDLSLPG+RVG IYS NENVL ASK+LTRF SIS PTQQLLISMLSD RFI++YI+ NRER+ MY+LFV GLKQLGI+C SSGG YCW NMSGL+ S +EKGEL LW KLLNIAKIN+TPG ACHCIEPGWFRCCFTTL E DIP+V+ RI+
Sbjct: 31 MRLIVPLQG-VVQGRGGIVLGSLIPCALFYFLQFYLKRHRSSPRSSNLPTSPSSSGLPELQRTTSRSNLSTRGSIGQAHISSRANSIAKSDDSPYYIGLERVSKDAYDELKNPNGIIQLGLSENRLSLDLIERWLSRNLNDSMLGGGGDGLSISGIATYQPFDGLSELKVAVADFMSRVMGGGVSFNPSQLVLTSGATPAVEILCFCLADQGNAFLVPTPYYPGKAICSFDRDMRWRTGVELIPVHCRSSDDFTLSITALDQAFNQARKRGQKIRGILISNPSNPVGNLLTRDTLCNLLDFAREKNIHIISDEIFAGSTFGSEEFVSMAEIIDSEDFDKDRVHLIYGLSKDLSLPGFRVGVIYSLNENVLNASKRLTRFSSISVPTQQLLISMLSDTRFIKEYIETNRERIRTMYNLFVAGLKQLGIKCTNSSGGFYCWANMSGLMRSYNEKGELELWDKLLNIAKINVTPGLACHCIEPGWFRCCFTTLAEKDIPVVIERIR 532
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3X2N9 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_016433958.1}))
HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 339/504 (67.26%), Postives = 409/504 (81.15%), Query Frame = 0
Match: A0A1S3X2N9 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_016433958.1}))
HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 339/504 (67.26%), Postives = 409/504 (81.15%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPANST-----------------PSSSS-------SSPIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLL-QGG--LTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKIT 477
MRLVVPLQG +V GRGGL+LGSL+PCALFYFLQF+LKRHR+ +S+ P SSS S R LSSRAS +A PN+SPYYIGMD R+DPY+ L +PDGIIDLG+AENRLSLDLIE WL N NDS+L +GG L I G+ TYQP DGL ++KVAM+GF+S+V+G +S +PS++VLTSGATPA+E+LCFCLAD G+A L+P PYYPGFDRD+ +RTG++LIPVHC SSD F+++ N L+Q+FNQARKRG+++RG+LISNPSNPVGNIL+RE+L++LL FA EKNIH+ISDE+FAGS YG+EEFVSMAEIL ED +++RVHIIYGLSKDLSLPG+R G +YS NENV+AASKKLTRFCS S PTQ+LL++MLSD FI Y++ NRERL K++DLFV GLKQ GIEC SS GLYCWVNMS LI +EKGEL LW KLLN+AKIN+TPGSACHCIEPGWFRCCF+TL E DIP+VM RI+K+
Sbjct: 32 MRLVVPLQG-VVQGRGGLILGSLIPCALFYFLQFYLKRHRTKPSSSSSNPPSPSTSSPNLAELPRSSSRLNLSTRGSIGRVFLSSRASLVAAPNDSPYYIGMDRFRADPYNELDNPDGIIDLGLAENRLSLDLIEKWLSSNLNDSMLGRGGDRLNINGILTYQPNDGLTELKVAMAGFMSQVMGEKVSFDPSRMVLTSGATPAIELLCFCLADHGNALLVPTPYYPGFDRDIRWRTGIDLIPVHCRSSDAFLVNINALDQSFNQARKRGQKVRGILISNPSNPVGNILSREMLHSLLDFAREKNIHVISDEIFAGSNYGSEEFVSMAEILDEEDPDRDRVHIIYGLSKDLSLPGFRFGVMYSFNENVVAASKKLTRFCSASAPTQRLLVAMLSDAGFIHDYMRTNRERLRKVFDLFVAGLKQFGIECMNSSAGLYCWVNMSSLICPYNEKGELELWEKLLNVAKINVTPGSACHCIEPGWFRCCFSTLAEKDIPVVMERIRKVV 534
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T2Q7 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_011076292.1}))
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 333/499 (66.73%), Postives = 404/499 (80.96%), Query Frame = 0
Match: A0A6I9T2Q7 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_011076292.1}))
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 333/499 (66.73%), Postives = 404/499 (80.96%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPANSTPSSSSS--------------------SPIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQGG---LTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKI 476
MRL+VPLQG IV GRGGL+LGSL+PC LFYFLQF+LKRHRSP + PS S+S S RA +S+R S IAKPN+SPYYIG+D VR DPY + +PDG+I LG++ENRLSLDLIE WL +N DS+L G L I G+ATYQP DGLM+ KVAM+ F++EV+ +S +PS++V+TSGATPA+EIL FCLAD G+AFL+PAPYYPGFDRD+ +R GVELIPVHC S D F LS LEQ FNQARKRG+++RG+LISNP+NPVGN+LN++LLY+LL FA E+NIHIISDE+FAGS YGNEEFVSMAEI SED +K+RVHIIYGLSKD S+PG+RVG IYS N++VLAAS+KLTRF S+ST TQ LL+SMLSDKRFIQ+Y+K N++R+ MYDLFV GL++LG+EC KSSGGLYCWV++S LIS +EKGEL LW KLLN AK+N+TPGSACHCIEPGWFR CFTTL E +IP+VM R++K+
Sbjct: 21 MRLIVPLQG-IVQGRGGLILGSLIPCTLFYFLQFYLKRHRSPPQNPPSRSTSAANLSELQRSSSRANLLARGSTGRAHVSARVSSIAKPNDSPYYIGLDRVREDPYDEMGNPDGVIQLGLSENRLSLDLIEEWLSKNCTDSILGVGGDALGINGIATYQPMDGLMEFKVAMADFMTEVMERKVSFDPSRVVVTSGATPALEILSFCLADHGNAFLVPAPYYPGFDRDIRWRAGVELIPVHCRSCDNFTLSITALEQAFNQARKRGQKVRGILISNPANPVGNMLNKDLLYDLLDFARERNIHIISDEIFAGSTYGNEEFVSMAEIADSEDADKDRVHIIYGLSKDFSIPGFRVGVIYSFNKSVLAASRKLTRFSSVSTATQHLLVSMLSDKRFIQEYLKTNKQRIRSMYDLFVAGLRELGVECTKSSGGLYCWVDLSRLISPYNEKGELDLWDKLLNRAKLNVTPGSACHCIEPGWFRFCFTTLNEKEIPLVMERMRKV 518
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6KH23 ((Putative aminotransferase acs12 {ECO:0000313|EMBL:OIT24216.1}))
HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 337/504 (66.87%), Postives = 408/504 (80.95%), Query Frame = 0
Match: A0A1J6KH23 ((Putative aminotransferase acs12 {ECO:0000313|EMBL:OIT24216.1}))
HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 337/504 (66.87%), Postives = 408/504 (80.95%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPANST-----------------PSSSSSSPIRAQ-------LSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLL-QGG--LTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKIT 477
MRLVVPLQG +V GRGGL+LGSL+PCALFYFLQF+LKRHR+ +S+ P SSS + + LSSRAS +A PN+SPYYIGMD R+DPYH L +PDGIIDLG+AENRLSLDLIE WL N NDS+L +GG L I GL TYQP DGL ++KVA++GF+S+V+G S +PS++VLTSGATPA+E+LCFCLAD G+A L+P PYYPGFDRD+ +RTG++LIPVHC SSD F+++ L+Q F+QARKRG+++RG+LISNPSNPVGNIL+RE+L++LL FA EKNIH+ISDE+FAGS YG+EEFVSMAEIL ED +++RVHIIYGLSKDLSLPG+R+G +YS NENV+AASKKLTRFCS S PTQ+LL++MLSD FIQ Y++ NRERL K++DLFV GLKQ GIEC SS GLYCWVNMS LI +EKGEL LW KLLN+AKIN+TPGSACHCIEPGWFRCCF+TL E DIP+VM RI+K+
Sbjct: 32 MRLVVPLQG-VVQGRGGLILGSLIPCALFYFLQFYLKRHRTKPSSSSSNPPSPSTSSPNLAELPRSSSRLNLSTRGSIGCVFLSSRASLVAAPNDSPYYIGMDRFRADPYHELDNPDGIIDLGLAENRLSLDLIEKWLSSNLNDSMLGRGGDRLNINGLLTYQPHDGLTELKVAIAGFMSQVMGEKASFDPSRMVLTSGATPAIELLCFCLADHGNALLVPTPYYPGFDRDIRWRTGIDLIPVHCRSSDAFLVNITALDQAFSQARKRGQKVRGILISNPSNPVGNILSREMLHSLLDFAREKNIHVISDEIFAGSNYGSEEFVSMAEILDEEDPDRDRVHIIYGLSKDLSLPGFRLGVLYSFNENVVAASKKLTRFCSASAPTQRLLVAMLSDAGFIQDYVRTNRERLRKVFDLFVAGLKQFGIECMNSSAGLYCWVNMSSLICPYNEKGELELWEKLLNVAKINVTPGSACHCIEPGWFRCCFSTLAEKDIPVVMERIRKVV 534
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7FDK5 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 331/501 (66.07%), Postives = 400/501 (79.84%), Query Frame = 0
Match: A0A3Q7FDK5 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 331/501 (66.07%), Postives = 400/501 (79.84%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHR------------------SPANSTPS----SSSSSPIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQGGLTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKITPI 479
MRLVVPLQG +V GRGGL+LGSL+PCALFYFLQF+LKRHR S + S S+ S R LSSRAS +A PN+SPYY+GMD R+DPY L +PDG+IDLGIAENRLSLDLIE W+ N N GL I G+ TYQPFDG+ ++KVAMSGF+S+V+G +S +PS++VLTSGATPA+E+LCFCLAD G+A L+P PYYPGFDRD+ +RTGV+LIPV+C SSD FM+ TL+Q FN ARKRGK++RG+LISNPSNPVGNILNRE+LY +L FA EKNIH+ISDE+FAGS YG EEFVS+AEIL +D +++RVHIIYGLSKDLS+PG+R+G +YS NENV+AASKKLTRFC+ S PTQ LL++MLSD FI+ Y++ NRERL K++DLFV GLKQLGIEC KSS GLYCWVNMSGLI +EKGEL LW KLLN+AKIN+TPGSACHCIEPGWFRCCF+T++E IP+VM RI+K+ +
Sbjct: 31 MRLVVPLQG-VVQGRGGLILGSLIPCALFYFLQFYLKRHRTTPSSSNPPSPSTSSPNLSDLQRSSSRLNLSTRGSVGRVFLSSRASLVAAPNDSPYYVGMDRFRADPYDELDNPDGVIDLGIAENRLSLDLIEKWISSNVNIGSGGDGLNINGILTYQPFDGMAELKVAMSGFMSQVMGEKVSFDPSRMVLTSGATPAIEVLCFCLADHGNALLVPTPYYPGFDRDIRWRTGVDLIPVYCRSSDAFMVDITTLDQAFNHARKRGKKVRGILISNPSNPVGNILNREMLYRILDFAREKNIHVISDEIFAGSNYGGEEFVSIAEILDEDDADRDRVHIIYGLSKDLSVPGFRLGVLYSFNENVVAASKKLTRFCAASAPTQSLLVAMLSDAGFIKDYMRTNRERLRKVFDLFVAGLKQLGIECMKSSAGLYCWVNMSGLIGPYNEKGELELWEKLLNVAKINVTPGSACHCIEPGWFRCCFSTVEEKGIPVVMERIRKVVEL 530
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022Q8M3 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 338/499 (67.74%), Postives = 404/499 (80.96%), Query Frame = 0
Match: A0A022Q8M3 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 338/499 (67.74%), Postives = 404/499 (80.96%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRS-----------PAN--STPSSSSSSPI-------RAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQ---GGLTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKI 476
MRL+VPLQG +V GRGGL+LGSL+PCALFYFLQF+LKRHRS AN P SSS + + RA LS+RAS IAKPN+SPYYIG+D VR DPY + +PDG++ LG++ENRLSLDLIE WL N DS+L + + G+ATYQP DGLM KV M+ F++EV+GG +S +PS+L+LTSGATPA EIL FCLAD G+AFL+PAPYYPGFDRD+ +RTGVELIPVHC S D F LS LEQTFNQARKRG+++RG+LISNPSNPVGN+LNR++LY+LL FA E+NIHIISDE+FAGS YGNEEFVSMAEI+ +ED +K+RVHIIYGLSKD S+PG+RVGAIYS NENVLAAS+KLTRF S+STPTQ +L SMLSDK+F Q+YIK N++R+ M+ LFV GLK+LG+EC KSSGGLYCWV+MS LIS +EKGEL LW KLLN AKIN+TPGSACHCIEPGWFR CFTTL E +IP+V+ RI K+
Sbjct: 21 MRLIVPLQG-VVQGRGGLILGSLIPCALFYFLQFYLKRHRSPPSNPPPRSTSAANLSELPRSSSRANLLARGSTGRAHLSARASSIAKPNDSPYYIGLDRVREDPYDEIGNPDGVMQLGLSENRLSLDLIEEWLSNNLTDSVLGVRGEAMGLSGIATYQPMDGLMAFKVVMADFMTEVMGGRVSFDPSRLILTSGATPAAEILTFCLADQGNAFLVPAPYYPGFDRDIRWRTGVELIPVHCRSCDNFTLSITALEQTFNQARKRGQKVRGILISNPSNPVGNLLNRDMLYDLLDFARERNIHIISDEIFAGSTYGNEEFVSMAEIVDAEDADKDRVHIIYGLSKDFSIPGFRVGAIYSSNENVLAASRKLTRFSSVSTPTQLILSSMLSDKKFTQEYIKTNKKRIRTMFHLFVAGLKELGLECTKSSGGLYCWVDMSRLISPYNEKGELDLWDKLLNTAKINVTPGSACHCIEPGWFRFCFTTLSEREIPVVIERIHKV 518
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9GG74 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 697.197 bits (1798), Expect = 0.000e+0
Identity = 335/504 (66.47%), Postives = 404/504 (80.16%), Query Frame = 0
Match: A0A2N9GG74 (Aminotran_1_2 domain-containing protein {ECO:0000259|Pfam:PF00155})
HSP 1 Score: 697.197 bits (1798), Expect = 0.000e+0
Identity = 335/504 (66.47%), Postives = 404/504 (80.16%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPA-NSTPSSSSSS-----------------------PIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQ---GGLTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKIT 477
MRL+VPLQG +V GRGGL+LGSL+PCALFYF Q +LKRHRSP +S P+S S S P+R +SSRAS IAKPN+SPYYIG+D V DPY + +P+GII LG++ENRL DLIE WLL+N DS++ G L+I G+A YQP DGLM++KVAM+GF+S+V+G ++S +PSQ+VLTSGATPA+EIL FCLADPG+AFL+P PYYPGFDRD+ +RTGVELIPVHC S+D F+LS L+Q FNQ RKRG ++RG+LISNP+NP GN+L RE LYNLL FA EKNIHI+ DE+FAGS+YG+EEFVSMAEI+ +EDF+K RVHI+YGLSKDLSLPG+RVG IYS NE+VL A++KLTRF SIS PTQ+LLISMLSD RF Q YI+IN++R+ +M+DLFV GLK+LGI+CAKS GLYCWV+MSGLI S EKGEL LW KLLNIAKIN+TPGSACHCIEPGWFRCCFTTL DI IV+ RI K+
Sbjct: 26 MRLIVPLQG-VVQGRGGLILGSLIPCALFYFFQLYLKRHRSPKPDSNPTSPSQSSSNLADLQRSSSRSNLSSRGSFGPVR--VSSRASSIAKPNDSPYYIGLDKVSEDPYDRVHNPNGIIQLGLSENRLCFDLIEKWLLENMKDSVIGTEGGDLSISGIAPYQPCDGLMELKVAMAGFMSQVVGRSVSFDPSQMVLTSGATPALEILSFCLADPGNAFLVPTPYYPGFDRDMRWRTGVELIPVHCRSTDNFILSITALDQAFNQTRKRGIKVRGILISNPANPAGNLLPRETLYNLLDFAREKNIHIVCDEIFAGSMYGSEEFVSMAEIIDTEDFDKNRVHIVYGLSKDLSLPGFRVGVIYSFNESVLVAARKLTRFSSISAPTQRLLISMLSDMRFTQAYIEINKKRIREMHDLFVAGLKKLGIKCAKSCAGLYCWVDMSGLICSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTTLSREDIAIVIERIGKVA 526
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7Y1D2 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_009792590.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 335/504 (66.47%), Postives = 404/504 (80.16%), Query Frame = 0
Match: A0A1U7Y1D2 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_009792590.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 335/504 (66.47%), Postives = 404/504 (80.16%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPANST-----------------PSSSS-------SSPIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQ---GGLTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKIT 477
MRLVVPLQG +V GRGGL+LGSL+PCALFYFLQF+LKRHR+ +S+ P SSS S R LSSRAS +A PN+SPYYIGMD R+DPY+ L +PDGIIDLG+AENRLSLDLIE WL N NDS+L GL I G+ TYQP DGL +KVAM+GF+S+V+G +S +PS++VLTSGATPA+E+LCFCLAD G+A L+P PYYPGFDRD+ +RTG++LIPVHC SSD F+++ L+Q F+QARKRG+++RG+LISNPSNPVGNIL+RE+L++LL FA EKNIH+I DE+FAGS YG+EEFVSMAEIL ED +++RVHIIYGLSKDLSLPG+R+G +YS NENV+AASKKL RFCS S PTQ+LL++MLSD FIQ Y++ NRERL K++DLFV GLKQ GIEC SS GLYCWVNMS LI +EKGEL LW KLLN+AKIN+TPGSACHCIEPGWFRCCF+TL E DIP+VM RI+K+
Sbjct: 32 MRLVVPLQG-VVQGRGGLILGSLIPCALFYFLQFYLKRHRTKPSSSSSNPPSPSTSSPNLAELPRSSSRLNLSTRDSIGRVFLSSRASLVAAPNDSPYYIGMDRFRADPYNELDNPDGIIDLGLAENRLSLDLIEKWLSSNLNDSMLGRGGDGLNINGILTYQPLDGLTGLKVAMAGFMSQVMGEKVSFDPSRMVLTSGATPAIELLCFCLADHGNALLVPTPYYPGFDRDIKWRTGIDLIPVHCRSSDTFLVNITALDQAFSQARKRGQKVRGILISNPSNPVGNILSREMLHSLLDFAREKNIHVILDEIFAGSNYGSEEFVSMAEILDEEDPDRDRVHIIYGLSKDLSLPGFRLGVLYSFNENVVAASKKLARFCSTSAPTQRLLVAMLSDAGFIQDYMRTNRERLRKVFDLFVAGLKQFGIECMNSSAGLYCWVNMSRLICPYNEKGELKLWEKLLNVAKINVTPGSACHCIEPGWFRCCFSTLAEKDIPVVMERIRKVV 534
BLAST of DCAR_014610 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CXE7 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_016505818.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 335/504 (66.47%), Postives = 404/504 (80.16%), Query Frame = 0
Match: A0A1S4CXE7 ((probable aminotransferase ACS12 {ECO:0000313|RefSeq:XP_016505818.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 335/504 (66.47%), Postives = 404/504 (80.16%), Query Frame = 0
Query: 1 MRLVVPLQGLIVHGRGGLVLGSLLPCALFYFLQFHLKRHRSPANST-----------------PSSSS-------SSPIRAQLSSRASPIAKPNESPYYIGMDMVRSDPYHSLRSPDGIIDLGIAENRLSLDLIETWLLQNSNDSLLQ---GGLTIGGLATYQPFDGLMDMKVAMSGFVSEVIGGTISLNPSQLVLTSGATPAVEILCFCLADPGDAFLIPAPYYPGFDRDVLYRTGVELIPVHCGSSDGFMLSKNTLEQTFNQARKRGKRIRGVLISNPSNPVGNILNRELLYNLLTFAEEKNIHIISDEVFAGSVYGNEEFVSMAEILQSEDFEKERVHIIYGLSKDLSLPGYRVGAIYSCNENVLAASKKLTRFCSISTPTQQLLISMLSDKRFIQQYIKINRERLTKMYDLFVEGLKQLGIECAKSSGGLYCWVNMSGLISSRDEKGELALWHKLLNIAKINITPGSACHCIEPGWFRCCFTTLQENDIPIVMGRIQKIT 477
MRLVVPLQG +V GRGGL+LGSL+PCALFYFLQF+LKRHR+ +S+ P SSS S R LSSRAS +A PN+SPYYIGMD R+DPY+ L +PDGIIDLG+AENRLSLDLIE WL N NDS+L GL I G+ TYQP DGL +KVAM+GF+S+V+G +S +PS++VLTSGATPA+E+LCFCLAD G+A L+P PYYPGFDRD+ +RTG++LIPVHC SSD F+++ L+Q F+QARKRG+++RG+LISNPSNPVGNIL+RE+L++LL FA EKNIH+I DE+FAGS YG+EEFVSMAEIL ED +++RVHIIYGLSKDLSLPG+R+G +YS NENV+AASKKL RFCS S PTQ+LL++MLSD FIQ Y++ NRERL K++DLFV GLKQ GIEC SS GLYCWVNMS LI +EKGEL LW KLLN+AKIN+TPGSACHCIEPGWFRCCF+TL E DIP+VM RI+K+
Sbjct: 32 MRLVVPLQG-VVQGRGGLILGSLIPCALFYFLQFYLKRHRTKPSSSSSNPPSPSTSSPNLAELPRSSSRLNLSTRDSIGRVFLSSRASLVAAPNDSPYYIGMDRFRADPYNELDNPDGIIDLGLAENRLSLDLIEKWLSSNLNDSMLGRGGDGLNINGILTYQPLDGLTGLKVAMAGFMSQVMGEKVSFDPSRMVLTSGATPAIELLCFCLADHGNALLVPTPYYPGFDRDIKWRTGIDLIPVHCRSSDTFLVNITALDQAFSQARKRGQKVRGILISNPSNPVGNILSREMLHSLLDFAREKNIHVILDEIFAGSNYGSEEFVSMAEILDEEDPDRDRVHIIYGLSKDLSLPGFRLGVLYSFNENVVAASKKLARFCSTSAPTQRLLVAMLSDAGFIQDYMRTNRERLRKVFDLFVAGLKQFGIECMNSSAGLYCWVNMSRLICPYNEKGELKLWEKLLNVAKINVTPGSACHCIEPGWFRCCFSTLAEKDIPVVMERIRKVV 534
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BUT0 | E-Value: 0.000e+0, PID: 69.31 | (Putative Aminotransferase, class I/classII {ECO:0... [more] |
| A0A5J5AWF4 | E-Value: 0.000e+0, PID: 68.79 | Aminotran_1_2 domain-containing protein {ECO:00002... [more] |
| A0A1S3X2N9 | E-Value: 0.000e+0, PID: 67.26 | (probable aminotransferase ACS12 {ECO:0000313|RefS... [more] |
| A0A6I9T2Q7 | E-Value: 0.000e+0, PID: 66.73 | (probable aminotransferase ACS12 {ECO:0000313|RefS... [more] |
| A0A1J6KH23 | E-Value: 0.000e+0, PID: 66.87 | (Putative aminotransferase acs12 {ECO:0000313|EMBL... [more] |
| A0A3Q7FDK5 | E-Value: 0.000e+0, PID: 66.07 | Aminotran_1_2 domain-containing protein {ECO:00002... [more] |
| A0A022Q8M3 | E-Value: 0.000e+0, PID: 67.74 | Aminotran_1_2 domain-containing protein {ECO:00002... [more] |
| A0A2N9GG74 | E-Value: 0.000e+0, PID: 66.47 | Aminotran_1_2 domain-containing protein {ECO:00002... [more] |
| A0A1U7Y1D2 | E-Value: 0.000e+0, PID: 66.47 | (probable aminotransferase ACS12 {ECO:0000313|RefS... [more] |
| A0A1S4CXE7 | E-Value: 0.000e+0, PID: 66.47 | (probable aminotransferase ACS12 {ECO:0000313|RefS... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |