MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAW
YPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPT
DFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSR
PAKKSDNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYY
TESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAF
VLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSD
VMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSP
EIVAGIVRDHLQQIFEKTL*
| Relationships |
|---|
| The polypeptide, DCAR_005120, derives from mRNA, DCAR_005120. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7C2R1 (Glycos_transf_1 domain-containing protein {ECO:0000259|Pfam:PF00534})
HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0
Identity = 282/370 (76.22%), Postives = 330/370 (89.19%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAKKS-DNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKTL 369
+SIEQHGD +EFWEGLP+EM+ LA EL+QT+CRLNETI+VCHSEPGAWYPPLF+TLPCP GYG ++ VIGRTMFETDRVN HV RCN+MD+VWVPTDFH +TF+QSGVDPSKVVKIVQP+D KFFDP+KYKP +L S GTLVLGS + + FVFLSVFKWEYRKGWDVLL+SYLKEFS+ DGV+LYLLTNPY+++ DFGNKI+EFV SD+++P GWAP+YVID+HIAQID PR+YK+A+AFVLPSRGEGWGRP+VEAMAMSLPVI TNWSGPTEY+T+ENSYPLPV+RMS+VMEGPF GHLWAEPS D+L++LMRHVMSNPEEAKAKGRQARE+MINR+SPEIV+GI+ H+QQI K +
Sbjct: 129 LSIEQHGDQETLEFWEGLPQEMKSLAFELYQTECRLNETIVVCHSEPGAWYPPLFQTLPCPPTGYGNFKFVIGRTMFETDRVNPEHVRRCNQMDFVWVPTDFHASTFIQSGVDPSKVVKIVQPIDVKFFDPLKYKPLDLSSIGTLVLGSSSTNLNLEKEFVFLSVFKWEYRKGWDVLLKSYLKEFSKVDGVALYLLTNPYHSDRDFGNKIVEFVKDSDIEKPLEGWAPIYVIDTHIAQIDLPRLYKSANAFVLPSRGEGWGRPLVEAMAMSLPVIATNWSGPTEYLTEENSYPLPVDRMSEVMEGPFIGHLWAEPSLDELRSLMRHVMSNPEEAKAKGRQARENMINRFSPEIVSGILTHHIQQILNKMV 498
Match: A0A5J5B921 (Glycos_transf_1 domain-containing protein {ECO:0000259|Pfam:PF00534})
HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0
Identity = 276/370 (74.59%), Postives = 324/370 (87.57%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAKKS-DNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKTL 369
+SIEQHGD ++EFWEGLP+EM+ LA EL+QT+C+ ETI+VCHSEPGAWYPPLF+TLPCP GYG ++ VIGRTMFETDRVN HV RCN+MD+VWVPT+FH +TF++SGVDPSKVVKIVQP+D KFFDP+KYKP +LPS GTLVLGS + FVFLSVFKWEYRKGWDVLL+SYLK FS DGV+LYLLTNPY+++ DFGNKI+EFV SD+++P GWAP+YVID+HIAQID PR+YK+A+AFVLPSRGEGWGRP+VEAMAMSLPVI TNWSGPTEY+T++NSYPLPV+RMS+VMEGPF GHLWAEPS DKL++LMRHVMSNPEEAK KGRQAR DMI+R+SPEIVAGI+ HLQQI +
Sbjct: 129 LSIEQHGDQESLEFWEGLPQEMKSLAFELYQTECKFKETIVVCHSEPGAWYPPLFQTLPCPPTGYGNFKFVIGRTMFETDRVNPEHVRRCNQMDFVWVPTEFHASTFIRSGVDPSKVVKIVQPIDVKFFDPLKYKPLDLPSIGTLVLGSTSTNLNLKREFVFLSVFKWEYRKGWDVLLKSYLKAFSRVDGVALYLLTNPYHSDRDFGNKIVEFVEDSDIEKPVEGWAPIYVIDTHIAQIDLPRLYKSANAFVLPSRGEGWGRPLVEAMAMSLPVIATNWSGPTEYLTEDNSYPLPVDRMSEVMEGPFIGHLWAEPSVDKLRSLMRHVMSNPEEAKVKGRQARGDMISRFSPEIVAGILTHHLQQILNTMI 498
Match: A0A7J7D886 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5742498.1}))
HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 276/371 (74.39%), Postives = 330/371 (88.95%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELH--QTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAKKSDNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKTL 369
+SIEQHGDL ++EFWEGLP+ ++ LA EL+ Q +C++NETI++CHSEPGAWYPPLF+T+PCP GY + +VIGRTMFETDRVN HV+RCNRMDYVWVPTDFHV +FVQSGVDP+KVVKIVQP+D KFFDP+KY+P NL S G LVLGS KS+ +FVFLSVFKWEYRKGWD LL ++LKEFS+ DGV+LYLLTNPY++++DFGNKIL+FV GSD+++P +GWAP+YVIDSHIAQID P++YKAAD FVLPSRGEGWGRP+VEAMAMSLPVI TNWSGPTEY+T+EN YPLPV+RMS+V+EGPF+GHLWAEPS DKLQ LMRHVM+N EEAKAKGR+AREDM+ R+SPEI+AG+V DH+Q IFEK L
Sbjct: 33 LSIEQHGDLQSLEFWEGLPKNIKSLAFELYENQKQCKMNETIVICHSEPGAWYPPLFQTVPCPPTGYEDFMVVIGRTMFETDRVNPEHVKRCNRMDYVWVPTDFHVNSFVQSGVDPAKVVKIVQPIDVKFFDPIKYEPLNLASIGDLVLGS----KSEKNFVFLSVFKWEYRKGWDFLLEAFLKEFSQIDGVALYLLTNPYHSDNDFGNKILDFVDGSDIEKPDNGWAPIYVIDSHIAQIDLPKMYKAADVFVLPSRGEGWGRPLVEAMAMSLPVIATNWSGPTEYLTEENGYPLPVDRMSEVVEGPFEGHLWAEPSVDKLQILMRHVMTNIEEAKAKGRRAREDMVRRFSPEIIAGVVADHIQNIFEKML 399
Match: A0A068TV54 (Glycos_transf_1 domain-containing protein {ECO:0000259|Pfam:PF00534})
HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 277/368 (75.27%), Postives = 325/368 (88.32%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAKKS-DNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEK 367
+SIEQHGDL N+EFWEGLP MR LA+EL+Q+KCRLNETI++CHSEPGAWYPPLF+TLPCP G+G ++VIGRTMFETDRVNA HV+RCN+MDYVWVPT+FHV +FVQSGVDPSKVVKIVQPVD +FFDPVK++P L S +LVLGS S +FVFLSVFKWEYRKGWDVLLRSYLKEFS AD V+LYLLTNPY+++ DFGNKI+E+V SDL++P +GWAPVYVID+HIAQ+D PR+YKAADAFVLPSRGEGWGRP+VEAMAMSLPVI TNWSGPTEY+T++NSYPLPVERMS+V EGPF+GHLW+EPS LQ LMRHV++NPE+AKAKG QAREDMI+R+SP+IVA IV + +QQI +
Sbjct: 135 LSIEQHGDLENLEFWEGLPFGMRNLAIELYQSKCRLNETIVICHSEPGAWYPPLFQTLPCPPTGFGDVKVVIGRTMFETDRVNAEHVKRCNQMDYVWVPTEFHVRSFVQSGVDPSKVVKIVQPVDLEFFDPVKHEPLELASIRSLVLGSETKNLSMGRNFVFLSVFKWEYRKGWDVLLRSYLKEFSNADDVALYLLTNPYHSDRDFGNKIVEYVEDSDLEKPVNGWAPVYVIDAHIAQVDLPRLYKAADAFVLPSRGEGWGRPVVEAMAMSLPVIATNWSGPTEYLTEDNSYPLPVERMSEVKEGPFKGHLWSEPSVQLLQVLMRHVITNPEKAKAKGMQAREDMISRFSPDIVAQIVTESIQQIVDN 502
Match: A0A6P6VPX6 ((uncharacterized protein LOC113725631 {ECO:0000313|RefSeq:XP_027104716.1}))
HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0
Identity = 277/370 (74.86%), Postives = 324/370 (87.57%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAKKS-DNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKTL 369
+SIEQHGDL N EFWEGLP MR LA+EL+Q+KCRLNETI++CHSEPGAWYPPLF+TLPCP G+G ++VIGRTMFETDRVNA HV+RCN+MDYVWVPT+FHV +FVQSGVDPSKVVKIVQPVD +FFDPVK++P L S +LVLGS S +FVFLSVFKWEYRKGWDVLLRSYLKEFS AD V+LYLLTNPY+++ DFGNKI+E+V SDL++P +GWAPVYVID+HIAQ+D PR+YKAADAFVLPSRGEGWGRP+VEAMAMSLPVI TNWSGPTEY+T++NSYPLPVERMS+V EGPF+GHLW+EPS LQ LMRHV++NPE+AKAKG QAREDMI+R+SP+IVA IV + +QQI +
Sbjct: 135 LSIEQHGDLENFEFWEGLPFGMRNLAIELYQSKCRLNETIVICHSEPGAWYPPLFQTLPCPPTGFGDVKVVIGRTMFETDRVNAEHVKRCNQMDYVWVPTEFHVRSFVQSGVDPSKVVKIVQPVDLEFFDPVKHEPLELASIRSLVLGSETKNLSMGRNFVFLSVFKWEYRKGWDVLLRSYLKEFSNADDVALYLLTNPYHSDRDFGNKIVEYVEDSDLEKPVNGWAPVYVIDAHIAQVDLPRLYKAADAFVLPSRGEGWGRPVVEAMAMSLPVIATNWSGPTEYLTEDNSYPLPVERMSEVKEGPFKGHLWSEPSVQLLQVLMRHVITNPEKAKAKGMQAREDMISRFSPDIVARIVTESIQQIVDNVF 504
Match: A0A6P6WB19 ((uncharacterized protein LOC113730640 {ECO:0000313|RefSeq:XP_027111277.1}))
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 275/369 (74.53%), Postives = 323/369 (87.53%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAKKS-DNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKT 368
+SIEQHGDL N+EFWEGLP MR LA+EL+Q+KCR NETI++CHSEPGAWYPPLF+TLPCP G+G ++VIGRTMFETDRVNA HV+RCN+MDYVWVPT+FHV +FVQSG DPSKVVKIVQPVD +FFDPVK++P L S +LVLGS S +FVFLSVFKWEYRKGWDVLLRSYLKEFS AD V+LYLLTNPY+++ DFGNKI+E+V SDL++P +GWAPVYV+D+HIAQ+D PR+YKAADAFVLPSRGEGWGRP+VEAMAMSLPVI TNWSGPTEY+T++NSYPLPVERMS+V EGPF+GHLWAEPS LQ LMRHV++NPE+AKAKG QAREDMI+R+SP+IVA IV + +QQI +
Sbjct: 135 LSIEQHGDLENLEFWEGLPFGMRNLAIELYQSKCRWNETIVICHSEPGAWYPPLFQTLPCPPTGFGDVKVVIGRTMFETDRVNAEHVKRCNQMDYVWVPTEFHVRSFVQSGFDPSKVVKIVQPVDLEFFDPVKHEPLELASIRSLVLGSETKNLSMGRNFVFLSVFKWEYRKGWDVLLRSYLKEFSNADDVALYLLTNPYHSDRDFGNKIVEYVEDSDLEKPVNGWAPVYVVDAHIAQVDLPRLYKAADAFVLPSRGEGWGRPVVEAMAMSLPVIATNWSGPTEYLTEDNSYPLPVERMSEVKEGPFKGHLWAEPSVQLLQVLMRHVITNPEKAKAKGMQAREDMISRFSPDIVARIVTESIQQIVDNV 503
Match: A0A2I4FUM9 ((uncharacterized protein LOC109002169 {ECO:0000313|RefSeq:XP_018835351.1}))
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 271/368 (73.64%), Postives = 320/368 (86.96%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAK-KSDNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEK 367
++IE HGD ++EFWEGLP+ + LA+ELHQT+CR+NETI++CHSEPGAWYPPLFET PCP Y ++ VIGRTMFETDRVNA HV+RCN+MDYVWVPT+FHV+TF++SGVDPSKVVKI+QP+D KFFDP+ YKP +L S GTLVLGS S F+FLS+FKWEYRKGWDVLL+SYLKEFS DGV+LYLLTNPY+++ DFGNKI+EFV +D+++P GWAPVYVID+HIAQID PR+YKAADAFVLPSRGEGWGRP+VEAMAMSLPVI TNWSGPTEY+++ENSYPL V+RMS VMEGPF+GHLWAEPS DKLQ LMRHVM+N E+AK KGRQAR+DMI R+SPEIVA IV DH+Q I +K
Sbjct: 131 VAIEHHGDEESIEFWEGLPKYTKNLALELHQTECRMNETIVICHSEPGAWYPPLFETFPCPPGAYQNFKSVIGRTMFETDRVNADHVKRCNQMDYVWVPTEFHVSTFIESGVDPSKVVKIIQPIDVKFFDPLMYKPLDLSSLGTLVLGSTTQNLNSKKEFIFLSIFKWEYRKGWDVLLKSYLKEFSRVDGVALYLLTNPYHSDRDFGNKIIEFVEDTDIEKPVAGWAPVYVIDTHIAQIDLPRLYKAADAFVLPSRGEGWGRPLVEAMAMSLPVIGTNWSGPTEYLSEENSYPLSVDRMSQVMEGPFKGHLWAEPSVDKLQVLMRHVMNNVEDAKDKGRQARKDMIRRFSPEIVAEIVTDHIQNILQK 498
Match: A0A6P3ZML6 ((uncharacterized protein LOC107413173 {ECO:0000313|RefSeq:XP_015876537.1}))
HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 268/368 (72.83%), Postives = 319/368 (86.68%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAKKSDNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKT 368
++IEQHGDL ++EFW+GLPE +R LA ELHQT CR+NETI++CHSEPGAW PPLFETLPCP Y ++ VIGRTMFETDR+N HV+RCNRM+YVWVPT+FHV+TFV SGVDPSKVVKIVQP+D KFFDP+ YKPF+L S G LVLG+ P + FVFLS+FKWEYRKGWDVLL+SYL+EFSEADGV+LY+LTNPY+T+ DFGNKI+EFV S++++P +GWAP+YVID+HIAQID PR+YKAA+ FVLPSRGEGWGRPIVEAMAMSLPVI TNWSGPTE++T+ENSYPL V+RMS+VMEGPF+GHLWAEPS KL+ LMRHVM N EEA+ KG +AREDMI R+SPEIVA I+ D +Q I E +
Sbjct: 130 LAIEQHGDLESLEFWDGLPEYIRSLAFELHQTDCRMNETIVICHSEPGAWNPPLFETLPCPPAAYQNFKAVIGRTMFETDRLNPDHVKRCNRMNYVWVPTEFHVSTFVGSGVDPSKVVKIVQPIDVKFFDPLLYKPFDLASAGNLVLGTPPHNSNAKKFVFLSIFKWEYRKGWDVLLKSYLEEFSEADGVALYMLTNPYHTDRDFGNKIVEFVEHSEIEKPENGWAPIYVIDTHIAQIDLPRMYKAANVFVLPSRGEGWGRPIVEAMAMSLPVIATNWSGPTEFLTEENSYPLSVDRMSEVMEGPFKGHLWAEPSVSKLRVLMRHVMQNIEEAEDKGNKAREDMIRRFSPEIVAKILADSIQIILENS 497
Match: A0A7N2LHY4 (Glycos_transf_1 domain-containing protein {ECO:0000259|Pfam:PF00534})
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 270/369 (73.17%), Postives = 320/369 (86.72%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGYGKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRPAK-KSDNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKT 368
++IEQHGDL ++EFWEGLP+ ++KLA EL+QT+CR++ETI+VCHSEPGAW PPLFETLPCP Y ++ VIGRTMFETDRVN HV+RCN+MDYVWVPTDFHV+TF+QSGVDPSKVVKI+QP+D KFFDP+KYKP +L G LVLG+ S F+FLS+FKWEYRKGWDVLLRSYLKEFS DGV+LYLLTNPY+++ DFGNKI+EFV S +++P GWAPVYVID+HIAQ D PR+YKA +AFVLPSRGEGWGRP+VEAMAMSLP+I TNWSGPTEY+T+ENSYPLPV+RMS+V+EGPF GHLWAEPS DKLQ LMRHVM+N EEAKAKG++AREDMI R+SPEIVA IV +H+Q I +K
Sbjct: 32 LAIEQHGDLESLEFWEGLPKYIQKLAFELYQTECRMDETIVVCHSEPGAWNPPLFETLPCPPGAYQNFKSVIGRTMFETDRVNLEHVKRCNQMDYVWVPTDFHVSTFIQSGVDPSKVVKIIQPIDVKFFDPLKYKPLDLSYIGKLVLGTATRNLNSKKEFMFLSIFKWEYRKGWDVLLRSYLKEFSSVDGVALYLLTNPYHSDGDFGNKIVEFVEESGMEKPVAGWAPVYVIDTHIAQTDLPRLYKAVNAFVLPSRGEGWGRPLVEAMAMSLPMIATNWSGPTEYLTEENSYPLPVDRMSEVVEGPFIGHLWAEPSVDKLQVLMRHVMNNVEEAKAKGKRAREDMIRRFSPEIVAEIVTNHIQDILQKV 400
Match: A0A1J6JRD1 (Glycos_transf_1 domain-containing protein {ECO:0000259|Pfam:PF00534})
HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 270/370 (72.97%), Postives = 317/370 (85.68%), Query Frame = 0
Query: 1 MSIEQHGDLLNMEFWEGLPEEMRKLAVELHQTKCRLNETIIVCHSEPGAWYPPLFETLPCPEIGY-GKYRIVIGRTMFETDRVNAHHVERCNRMDYVWVPTDFHVTTFVQSGVDPSKVVKIVQPVDWKFFDPVKYKPFNLPSKGTLVLGSRP-AKKSDNHFVFLSVFKWEYRKGWDVLLRSYLKEFSEADGVSLYLLTNPYYTESDFGNKILEFVAGSDLKRPAHGWAPVYVIDSHIAQIDFPRIYKAADAFVLPSRGEGWGRPIVEAMAMSLPVIITNWSGPTEYMTKENSYPLPVERMSDVMEGPFQGHLWAEPSADKLQNLMRHVMSNPEEAKAKGRQAREDMINRYSPEIVAGIVRDHLQQIFEKT 368
+ IEQHGDL N+EFWEGLP EMR LA+ELHQT+CRLNET+++CHSEPGAWYPPLF+T+PCP IGY G ++ VIGRTMFETDRVNA HV+RCN +D+VWVPTDFHV TF QSGVDP K+VKIVQPVD +FFDP+KY+P L S G LV+GS FVFLS+FKWEYRKGWDVLL SYL+EFS D V+LYLLTNPY+++ DFGNKI+E+V SDL+ P GWA VYVID HIAQ+D PR+YKAA+AFVLPSRGEGWGRPIVEAMAM LPVI TNWSGPTE+MT+ENSYPLPV+RMS+V EGPF+GHLWAEP DKLQ LMRHV+ N EE KAKGRQAR+DM++R+SPE+VAGIV DH+++I ++T
Sbjct: 130 LKIEQHGDLENLEFWEGLPLEMRNLAIELHQTECRLNETVVICHSEPGAWYPPLFDTIPCPPIGYNGHFKSVIGRTMFETDRVNAEHVKRCNLLDFVWVPTDFHVKTFTQSGVDPLKIVKIVQPVDLEFFDPLKYEPLELGSIGNLVMGSNSNGLNVGKKFVFLSIFKWEYRKGWDVLLSSYLREFSGGDDVALYLLTNPYHSDRDFGNKIVEYVEDSDLEEPRDGWARVYVIDEHIAQVDMPRLYKAANAFVLPSRGEGWGRPIVEAMAMELPVIATNWSGPTEFMTEENSYPLPVDRMSEVTEGPFKGHLWAEPCVDKLQMLMRHVIRNHEEVKAKGRQARDDMMSRFSPEVVAGIVSDHIERIIDRT 499
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7C2R1 | E-Value: 0.000e+0, PID: 76.22 | Glycos_transf_1 domain-containing protein {ECO:000... [more] |
| A0A5J5B921 | E-Value: 0.000e+0, PID: 74.59 | Glycos_transf_1 domain-containing protein {ECO:000... [more] |
| A0A7J7D886 | E-Value: 0.000e+0, PID: 74.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5742... [more] |
| A0A068TV54 | E-Value: 0.000e+0, PID: 75.27 | Glycos_transf_1 domain-containing protein {ECO:000... [more] |
| A0A6P6VPX6 | E-Value: 0.000e+0, PID: 74.86 | (uncharacterized protein LOC113725631 {ECO:0000313... [more] |
| A0A6P6WB19 | E-Value: 0.000e+0, PID: 74.53 | (uncharacterized protein LOC113730640 {ECO:0000313... [more] |
| A0A2I4FUM9 | E-Value: 0.000e+0, PID: 73.64 | (uncharacterized protein LOC109002169 {ECO:0000313... [more] |
| A0A6P3ZML6 | E-Value: 0.000e+0, PID: 72.83 | (uncharacterized protein LOC107413173 {ECO:0000313... [more] |
| A0A7N2LHY4 | E-Value: 0.000e+0, PID: 73.17 | Glycos_transf_1 domain-containing protein {ECO:000... [more] |
| A0A1J6JRD1 | E-Value: 0.000e+0, PID: 72.97 | Glycos_transf_1 domain-containing protein {ECO:000... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |